jiangyuan2li/quickpath
Quick Pathway Analysis

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Quick Pathway Analysis

check_pathway_nameCheck whether pathway names are valid
extract_genes_by_pathwayExtract DEGs from pathways
fig_pathA line chart for pathways' over-representation level
grab_degs_from_cuffdiffGrab differential expressed genes (DEGs) from cuffdiff result
pathway_analysishypergeometric test for RNA-seq
pathway_analysis_methhypergeometric test for DNA-methylation seq
jiangyuan2li/quickpath documentation built on Dec. 8, 2019, 4:05 p.m.

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