API for jianhong/ATACseqTFEA
Transcription Factor Enrichment Analysis for ATAC-seq
| Global functions | |
|---|---|
| $,TFEAresults-method | Man page |
| $<-,TFEAresults-method | Man page |
| ATACseqTFEA | Man page |
| ATACseqTFEA-package | Man page |
| DBscore | Man page Source code |
| ESvolcanoplot | Man page Source code |
| PWMatrixList | Man page |
| TFEA | Man page Source code |
| TFEAresults | Man page Source code |
| TFEAresults-class | Man page |
| TFEAresults-methods | Man page |
| [[,TFEAresults,ANY,ANY-method | Man page |
| [[<-,TFEAresults,ANY,ANY-method | Man page |
| as,TFEAresults,data.frame-method | Man page |
| calWeights | Man page Source code |
| checkInteger | Source code |
| cluster_PWMs | Man page |
| coerce,TFEAresults,data.frame-method | Man page |
| count5ends | Man page Source code |
| countsNormalization | Man page Source code |
| doTFEA | Man page Source code |
| eventsFilter | Man page Source code |
| expandBindingSites | Man page Source code |
| extdata | Man page |
| findOverlaps1 | Source code |
| getBindingScore | Source code |
| getBindingSites | Man page |
| getBindingSites,TFEAresults-method | Man page |
| getEnrichmentScore | Man page |
| getEnrichmentScore,TFEAresults-method | Man page |
| getMotifID | Man page |
| getMotifID,TFEAresults-method | Man page |
| getOpenScore | Source code |
| getScore | Source code |
| getWeightedBindingScore | Man page Source code |
| importFimoBindingSites | Man page Source code |
| plotES | Man page Source code |
| prepareBindingSites | Man page Source code |
| pseudoLog2 | Source code |
| reduceByPercentage | Man page Source code |
| reduceList | Source code |
| show,TFEAresults-method | Man page |
