TFEAresults-class: Class '"TFEAresults"'

In jianhong/ATACseqTFEA: Transcription Factor Enrichment Analysis for ATAC-seq

Class "TFEAresults"

Description

An object of class "TFEAresults" represents the results of TFEA.

Usage

TFEAresults(...)

Arguments

...	Each argument in ... becomes an slot in the new "TFEAresults"-class.

Value

A TFEAresults object.

Slots

enrichmentScore

"numeric Matrix", specify the enrichment score for each transcription factor (TF). Every row represents a TF. The columns represents the accumulated enrichment score for that rank.

bindingSites

GenomicRanges object. It is keep same length and order as the columns in enrichmentScore.

motifID

"list". The ranks of binding sites for each TF.

resultsTable

"data.frame". The data frame contains the summarized enrichment score, the p-value, and adjuct p-value for each TF.

Examples

res <- readRDS(system.file("extdata", "res.rds", package="ATACseqTFEA"))
res

jianhong/ATACseqTFEA documentation built on June 9, 2025, 1:39 a.m.