Man pages for jianhong/ATACseqTFEA
Transcription Factor Enrichment Analysis for ATAC-seq
| ATACseqTFEA-package | Transcription Factor Enrichment Analysis for ATAC-seq |
| calWeights | Calculate the weights for binding score |
| count5ends | Prepare counts matrix for enrichment analysis |
| countsNormalization | Normalize counts by width of count region |
| DBscore | Differential binding analysis |
| doTFEA | Transcription factor enrichment analysis |
| ESvolcanoplot | Plot enrichment score for one transcription factor |
| eventsFilter | Filter the RangedSummarizedExperiment objects |
| expandBindingSites | Prepare the genomic ranges for proximal and distal regions... |
| extdata | Data in extdata |
| getWeightedBindingScore | Calculate the weighted binding score |
| importFimoBindingSites | Prepare binding site by fimo results |
| plotES | Plot enrichment score for one transcription factor |
| prepareBindingSites | Prepare binding site for TFEA |
| reduceByPercentage | Reduce by percentage of overlaps of GRanges object |
| TFEA | Transcription factor enrichment analysis |
| TFEAresults-class | Class '"TFEAresults"' |
| TFEAresults-methods | The methods for TFEAresults-class |
