| adjustImg | adjust image |
| alignmentImageData | alignment the images |
| cell-class | Class cell |
| cellCounter | cell counter |
| cellCounterSingleFrame | cell counter |
| changeCellSize | changeCellSize |
| condense | combind two Image2 |
| cropImages | crop the images |
| detectObjects | detect objects method1 |
| detectObjects2 | detect objects method2 |
| detectObjects3 | detect objects method3 |
| filterImage | filter image |
| GaussianBlur | GaussianBlur |
| getBackgroundAfterAlignment | get the background after alignment |
| Image2-class | Class Image2 |
| increaseContrast | increaseContrast |
| labeledImage2Cell | convert the labeled imaged to a list of cell object |
| outputCellTable | convert list of cell to data.frame |
| overlayDetections | overlay detections |
| rasterText | raster the text in a image |
| readFile | Read images |
| readListImg | read a list of image |
| removeBackground | removeBackground |
| rescaleImage | rescaleImage |
| rmBackground | remove background |
| ScurveAdjust | ScurveAdjust |
| setParentOfCells | given a list of cell, set the parent of offsprings of the... |
| writeCounterXML | write counters to xml file |
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