setParentOfCells: given a list of cell, set the parent of offsprings of the...

In jianhong/cellCounter: cell counter

given a list of cell, set the parent of offsprings of the cells depend on their number of frames and their position. 1. distance of same cell must have overlaps 2. same cell must be the nearest one 3. same cell in same frame can have multiple colors, and the other informations should be merge 4. is the same cell not appear in continus frames, then stop search. 5. one parent can have as much as two offsprings

Description

given a list of cell, set the parent of offsprings of the cells depend on their number of frames and their position. 1. distance of same cell must have overlaps 2. same cell must be the nearest one 3. same cell in same frame can have multiple colors, and the other informations should be merge 4. is the same cell not appear in continus frames, then stop search. 5. one parent can have as much as two offsprings

Usage

setParentOfCells(cells, maxFrameDist = 10, overlapPercentage = 0.1)

Arguments

cells	the cell list.
maxFrameDist	max difference of frames for same cell
overlapPercentage	minimal percentage of overlapping for same cell or parent and child

Value

a list of cell objects.

Author(s)

Jianhong Ou

jianhong/cellCounter documentation built on June 10, 2022, 8 p.m.