jianhong/cleanUpdTSeq: This package classifies putative polyadenylation sites as true or false/internally oligodT primed

This package implements a Naive Bayes classifier for accurate identification of polyadenylation sites (pA sites) from oligodT based 3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer is highly accurate and outperforms heuristic methods.

Getting started

Package details

AuthorSarah Sheppard, Jianhong Ou, Nathan Lawson, Lihua Julie Zhu
Bioconductor views GeneRegulation Genetics SequenceMatching Sequencing
MaintainerJianhong Ou <[email protected]>; Lihua Julie Zhu <[email protected]>
LicenseGPL-2
Version1.25.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jianhong/cleanUpdTSeq")
jianhong/cleanUpdTSeq documentation built on Nov. 6, 2019, 9:56 a.m.