Files in jianhong/cleanUpdTSeq
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data
DESCRIPTION
NAMESPACE
NEWS
R/00.AllClasses.R
R/00.cleanUpdTSeq-package.R
R/00.data.R
R/01.BED6WithSeq2GRangesSeq.R
R/02.getContextSequences.R
R/03.buildFeatureVector.R
R/04.buildClassifier.R
R/05.predictTestSet.R
data/classifier.rda
data/data.NaiveBayes.rda
data/datalist
inst/CITATION
inst/extdata/test-predNaiveBayes.rda
inst/extdata/test-predNaiveBayes.txt
inst/extdata/test.bed
inst/unitTests/test_predictTestSet.R
man/BED6WithSeq2GRangesSeq.Rd
man/PASclassifier-class.Rd
man/buildClassifier.Rd
man/buildFeatureVector.Rd
man/classifier.Rd
man/cleanUpdTSeq.Rd
man/data.NaiveBayes.Rd
man/featureVector-class.Rd
man/getContextSequences.Rd
man/modelInfo-class.Rd
man/naiveBayes-class.Rd
man/predictTestSet.Rd
tests/runTests.R
vignettes/cleanUpdTSeq.Rmd
