Man pages for jianhong/cleanUpdTSeq
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data
| BED6WithSeq2GRangesSeq | Covert (extended) BED6 file to a GRanges object |
| buildClassifier | Build a Naive Bayes Classifier |
| buildFeatureVector | build Feature Vector_2 |
| classifier | NaiveBayes classifier |
| cleanUpdTSeq | This package classifies putative polyadenylation sites. |
| data.NaiveBayes | Training Data |
| featureVector-class | Class '"featureVector"' |
| getContextSequences | Retrieve upstream and downstream sequences |
| modelInfo-class | Class '"modelInfo"' |
| naiveBayes-class | Class '"naiveBayes"' |
| PASclassifier-class | Class '"PASclassifier"' |
| predictTestSet | predict authenticity of putative pA sites |
