Files in jianhong/dagLogo
dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory
DESCRIPTION
NAMESPACE
NEWS
R/allclass.R
R/buildBackgroundModel.R
R/cachedEnv.R
R/cleanPeptides.R
R/dagLogo-package.R
R/dagLogo.R
R/data.R
R/fetchSequence.R
R/formatSequence.R
R/prepareProteome.R
R/prepareProteomeByFTP.R
R/prepareProteomeByUniProtWS.R
R/testDAU.R
README.md
data/datalist
data/ecoli.proteome.rda
data/proteome.example.rda
data/seq.example.rda
inst/CITATION
inst/extdata/HUMAN.fasta
inst/extdata/cap.fasta
inst/extdata/dagLogoTestData.csv
inst/extdata/grB.txt
inst/extdata/peptides2filter.csv
inst/extdata/peptides4dagLogo.csv
inst/extdata/sample_seq.fasta
inst/extdata/test.data.txt
man/Proteome-class.Rd
man/addScheme.Rd
man/availableSchemes.Rd
man/buildBackgroundModel.Rd
man/buildZTestBackgroundModel.Rd
man/cleanPeptides.Rd
man/colorsets.Rd
man/colorsets2.Rd
man/dagBackground-class.Rd
man/dagHeatmap.Rd
man/dagLogo-package.Rd
man/dagLogo.Rd
man/dagPeptides-class.Rd
man/ecoli.proteome.Rd
man/fetchSequence.Rd
man/formatSequence.Rd
man/getData.Rd
man/getGroupingSymbol.Rd
man/initiateBackgroundModel.Rd
man/nameHash.Rd
man/prepareProteome.Rd
man/prepareProteomeByFTP.Rd
man/prepareProteomeByUniProtWS.Rd
man/proteome.example.Rd
man/seq.example.Rd
man/testDAU.Rd
man/testDAUresults-class.Rd
tests/runTests.R
tests/testthat/test_DAGtest.R
tests/testthat/test_buildBackgroundModel.R
tests/testthat/test_fetchSequence.R
vignettes/bibliography.bib
vignettes/dagLogo.Rmd
vignettes/dagLogo_flowchart.png
