initiateBackgroundModel: Create a new 'dagBackground-class' object for 'testDAU'.

In jianhong/dagLogo: dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory

Create a new dagBackground-class object for testDAU.

Description

Create a new dagBackground-class object for testDAU.

Usage

initiateBackgroundModel(background, numSubsamples = 1L, testType)

Arguments

background	A list, each element of which is a vector of aligned peptide sequences of the same length.
numSubsamples	An integer, the number of random samplings to get background sequence set.
testType	An character, the type of statistic testing : "ztest" or "fisher".

Value

An object of dagBackground-class.

Author(s)

Haibo Liu

jianhong/dagLogo documentation built on Nov. 5, 2024, 7:46 a.m.