filterCount: filter computeMatrix output
In jianhong/deepToolsDownstream: downstream plots for deepTools
Description
Usage
Arguments
Value
Examples
Description
Filter output of importCount.
Usage
1
filterCount(se, subset)
Arguments
se
a SummarizedExperiment object from importCount.
subset
filter condition for rows.
Value
a SummarizedExperiment object
Examples
1
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file <- system.file("extdata", "count.gz", package= "deepToolsDownstream")
se <- importCount(file)
library(SummarizedExperiment)
keep <- rowMeans(assays(se)[[1]], na.rm = TRUE) < 2 ## arbitory number
nrow(se)
se <- filterCount(se, subset=keep)
nrow(se)
table(keep)
jianhong/deepToolsDownstream documentation built on Oct. 22, 2021, 7:48 a.m.
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Description Usage Arguments Value Examples
Description
Filter output of importCount.
Usage
1 | filterCount(se, subset)
|
Arguments
se |
a SummarizedExperiment object from importCount. |
subset |
filter condition for rows. |
Value
a SummarizedExperiment object
Examples
1 2 3 4 5 6 7 8 | file <- system.file("extdata", "count.gz", package= "deepToolsDownstream")
se <- importCount(file)
library(SummarizedExperiment)
keep <- rowMeans(assays(se)[[1]], na.rm = TRUE) < 2 ## arbitory number
nrow(se)
se <- filterCount(se, subset=keep)
nrow(se)
table(keep)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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