plotProfile: plot profiles
In jianhong/deepToolsDownstream: downstream plots for deepTools

Plot a profile for counts.

plotProfile(
  se,
  loessSmooth = TRUE,
  span = 1/25,
  facet = "group",
  xaxis_breaks = NULL,
  xaxis_label = NULL
)

`se`	a SummarizedExperiment object from importCount.
`loessSmooth`	Use loess.smooth to smooth curve or not.
`span`	smoothness parameter for loess.
`facet`	group or sample. This will be passed to facet_wrap. It can be set to NULL.
`xaxis_breaks, xaxis_label`	xaxis breaks and labels. see scale_x_continuous.

ggplot object

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file <- system.file("extdata", "count.gz", package= "deepToolsDownstream")
se <- importCount(file)
plotProfile(se)

jianhong/deepToolsDownstream documentation built on Oct. 22, 2021, 7:48 a.m.

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