Man pages for jianlin-cheng/GNET2
Constructing gene regulatory networks from expression data through functional module inference

build_moduleFit a regression tree.
build_moduleRBuild regression tree.
build_moduleR_heuristicBuild regression tree with splits are detemined by K-means...
build_split_tableBuild split table by K-means heuristicly.
calc_likelihood_scoreCalculate Gaussian Likelihood score.
extract_edgesExtract the network from the gnet result
get_correlation_listCalculate correlation within each group.
gnetRun GNET2
kneepointDetectionKnee point detection.
plot_gene_groupPlot a module
plot_group_correlationPlot the correlation of each group
plot_treePlot the regression tree.
save_gnetSave the GNET2 results
similarity_scoreCompute the similarity from a predefined condition group
jianlin-cheng/GNET2 documentation built on Oct. 22, 2020, 11:24 p.m.