Man pages for jianlin-cheng/GNET2
Constructing gene regulatory networks from expression data through functional module inference
| build_module | Fit a regression tree. |
| build_moduleR | Build regression tree. |
| build_moduleR_heuristic | Build regression tree with splits are detemined by K-means... |
| build_split_table | Build split table by K-means heuristicly. |
| calc_likelihood_score | Calculate Gaussian Likelihood score. |
| extract_edges | Extract the network from the gnet result |
| get_correlation_list | Calculate correlation within each group. |
| gnet | Run GNET2 |
| kneepointDetection | Knee point detection. |
| plot_gene_group | Plot a module |
| plot_group_correlation | Plot the correlation of each group |
| plot_tree | Plot the regression tree. |
| save_gnet | Save the GNET2 results |
| similarity_score | Compute the similarity from a predefined condition group |
