jimhester/surveillance
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

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Search the jimhester/surveillance package
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Functions
460
Source code
132
Man pages
185
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jimhester/surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
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API

API for jimhester/surveillance
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

Global functions
AIC.twinSIR Man page
LLR.fun Man page
LRCUSUM.runlength Man page
MMRcoverageDE Man page
R0 Man page
R0.simEpidataCS Man page
R0.twinstim Man page
RPS Man page
W_np Man page
W_powerlaw Man page
[,sts,ANY,ANY,ANY-method Man page
[,sts,index,missing,missing-method Man page
[,sts,missing,index,missing-method Man page
[,sts,missing,missing,ANY-method Man page
[,sts-method Man page
[.epidata Man page
[.epidataCS Man page
abattoir Man page
add1.twinstim Man page
addFormattedXAxis Man page
addSeason2formula Man page
aggregate,sts,ANY,ANY-method Man page
aggregate,sts-method Man page
aggregate,stsBP-method Man page
aggregate.disProg Man page
alarms Man page
alarms,sts-method Man page
alarms,stsBP-method Man page
alarms<- Man page
alarms<-,sts-method Man page
alarms<-,stsBP-method Man page
algo.bayes Man page
algo.bayes1 Man page
algo.bayes2 Man page
algo.bayes3 Man page
algo.bayesLatestTimepoint Man page
algo.call Man page
algo.cdc Man page
algo.cdcLatestTimepoint Man page
algo.compare Man page
algo.cusum Man page
algo.farrington Man page
algo.farrington.assign.weights Man page
algo.farrington.fitGLM Man page
algo.farrington.fitGLM.fast Man page
algo.farrington.fitGLM.populationOffset Man page
algo.farrington.threshold Man page
algo.glrnb Man page
algo.glrpois Man page
algo.hhh Man page
algo.hhh.grid Man page
algo.hmm Man page
algo.outbreakP Man page
algo.quality Man page
algo.rki Man page
algo.rki1 Man page
algo.rki2 Man page
algo.rki3 Man page
algo.rkiLatestTimepoint Man page
algo.rogerson Man page
algo.summary Man page
algo.twins Man page
animate Man page
animate.epidata Man page
animate.epidataCS Man page
animate.sts Man page
animate.summary.epidata Man page
anscombe.residuals Man page
arlCusum Man page
as.data.frame,sts-method Man page
as.data.frame,stsBP-method Man page
as.epidata Man page
as.epidata.data.frame Man page
as.epidata.default Man page
as.epidata.epidataCS Man page
as.epidataCS Man page
as.hhh4simslist Man page
as.stepfun.epidataCS Man page
as.xts.sts Man page
at2ndChange Man page
atChange Man page
atMedian Man page
backprojNP Man page
backprojNP.fit Man page
bayes Man page
bestCombination Man page
boda Man page
bodaDelay Man page
calc.outbreakP.statistic Man page
calibrationTest Man page
calibrationTest.default Man page
calibrationTest.hhh4 Man page
calibrationTest.oneStepAhead Man page
campyDE Man page
catcusum.LLRcompute Man page
categoricalCUSUM Man page
checkResidualProcess Man page
coef.ah Man page
coef.ahg Man page
coef.epitest Man page
coef.hhh4 Man page
coeflist Man page
coeflist.default Man page
coeflist.hhh4 Man page
coeflist.twinstim Man page
coerce,sts,stsBP-method Man page
coerce,sts,stsNC-method Man page
coerce,sts,ts-method Man page
coerce,ts,sts-method Man page
colnames,stsBP,missing,missing-method Man page
compMatrix.writeTable Man page
confint.hhh4 Man page
control Man page
control,sts-method Man page
control,stsBP-method Man page
control<- Man page
control<-,sts-method Man page
control<-,stsBP-method Man page
correct53to52 Man page
cox Man page
create.disProg Man page
create.grid Man page
cusum Man page
delayCDF Man page
delayCDF,stsNC-method Man page
deleval Man page
dim,sts-method Man page
dim,stsBP-method Man page
dimnames,sts-method Man page
disProg2sts Man page
discpoly Man page
dist.median Man page
drop1.twinstim Man page
dss Man page
earsC Man page
em.step.becker Man page
enlargeData Man page
epidata Man page
epidataCS Man page
epidataCS2sts Man page
epidataCSplot_space Man page
epidataCSplot_time Man page
epitest Man page
epoch Man page
epoch,sts-method Man page
epoch,stsBP-method Man page
epoch<- Man page
epoch<-,sts-method Man page
epoch<-,stsBP-method Man page
epochInYear Man page
epochInYear,sts-method Man page
epochInYear,stsBP-method Man page
estimateGLRNbHook Man page
estimateGLRPoisHook Man page
extractAIC.twinSIR Man page
farrington Man page
farringtonFlexible Man page
fe Man page
find.kh Man page
findH Man page
findK Man page
fixef Man page
fixef.hhh4 Man page
fluBYBW Man page
foodata Man page
fooepidata Man page
foofit Man page
formatDate Man page
formatPval Man page
formula.hhh4 Man page
getMaxEV Man page
getMaxEV_season Man page
glm_epidataCS Man page
glrnb Man page
glrpois Man page
h1_nrwrp Man page
hValues Man page
ha Man page
ha.sts Man page
hagelloch Man page
hagelloch.df Man page
head.epidataCS Man page
hepatitisA Man page
hhh4 Man page
hmm Man page
husO104Hosp Man page
iafplot Man page
imdepi Man page
imdepifit Man page
influMen Man page
initialize,sts-method Man page
initialize,stsBP-method Man page
inside.gpc.poly Man page
intensity.twinstim Man page
intensityplot Man page
intensityplot.simEpidata Man page
intensityplot.simEpidataCS Man page
intensityplot.twinSIR Man page
intensityplot.twinstim Man page
intersectPolyCircle Man page
intersectPolyCircle.SpatialPolygons Man page
intersectPolyCircle.gpc.poly Man page
intersectPolyCircle.owin Man page
intersperse Man page
isScalar Man page
isoWeekYear Man page
k1 Man page
knox Man page
ks.plot.unif Man page
layout.labels Man page
layout.scalebar Man page
linelist2sts Man page
logLik.hhh4 Man page
logLik.twinSIR Man page
logLik.twinstim Man page
logS Man page
loglikelihood Man page
logs Man page
m1 Man page
m2 Man page
m3 Man page
m4 Man page
m5 Man page
magic.dim Man page
make.design Man page
makePlot Man page
marks Man page
marks.epidataCS Man page
meanResponse Man page
measles.weser Man page
measlesDE Man page
measlesWeserEms Man page
meningo.age Man page
momo Man page
multinomialTS Man page
multinomialTS,sts-method Man page
multinomialTS,stsBP-method Man page
multinomialTS<- Man page
multinomialTS<-,sts-method Man page
multinomialTS<-,stsBP-method Man page
multiplicity Man page
multiplicity.Spatial Man page
n1 Man page
n2 Man page
naninf2zero Man page
nbOrder Man page
ncol,stsBP-method Man page
neighbourhood Man page
neighbourhood,sts-method Man page
neighbourhood,stsBP-method Man page
neighbourhood<- Man page
neighbourhood<-,sts-method Man page
neighbourhood<-,stsBP-method Man page
nobs.epidataCS Man page
nobs.hhh4 Man page
nobs.twinstim Man page
nowcast Man page
nowcast.fit Man page
nrow,stsBP-method Man page
observed Man page
observed,sts-method Man page
observed,stsBP-method Man page
observed<- Man page
observed<-,sts-method Man page
observed<-,stsBP-method Man page
oneStepAhead Man page
outbreakP Man page
outcomeFunStandard Man page
outside.ci Man page
pairedbinCUSUM Man page
pairedbinCUSUM.LLRcompute Man page
pairedbinCUSUM.runlength Man page
permutationTest Man page
permute.epidataCS Man page
pit Man page
pit.default Man page
pit.hhh4 Man page
pit.oneStepAhead Man page
plapply Man page
plot,sts,missing-method Man page
plot,stsBP,missing-method Man page
plot,stsBP-method Man page
plot,stsNC,missing-method Man page
plot.atwins Man page
plot.disProg Man page
plot.disProg.one Man page
plot.epidata Man page
plot.epidataCS Man page
plot.epitest Man page
plot.hhh4 Man page
plot.hhh4sims Man page
plot.hhh4simslist Man page
plot.knox Man page
plot.profile.twinSIR Man page
plot.stKtest Man page
plot.summary.epidata Man page
plot.survRes Man page
plot.survRes.one Man page
plot.twinSIR Man page
plot.twinstim Man page
plotHHH4_fitted Man page
plotHHH4_fitted1 Man page
plotHHH4_maps Man page
plotHHH4_maxEV Man page
plotHHH4_neweights Man page
plotHHH4_ri Man page
plotHHH4_season Man page
plotHHH4sims_size Man page
plotHHH4sims_time Man page
poly2adjmat Man page
polyAtBorder Man page
population Man page
population,sts-method Man page
population,stsBP-method Man page
population<- Man page
population<-,sts-method Man page
population<-,stsBP-method Man page
predict.ah Man page
predict.ahg Man page
predict.hhh4 Man page
primeFactors Man page
print.ah Man page
print.ahg Man page
print.algoQV Man page
print.disProg Man page
print.epidata Man page
print.epidataCS Man page
print.hhh4 Man page
print.summary.epidata Man page
print.summary.epidataCS Man page
print.summary.hhh4 Man page
print.summary.twinSIR Man page
print.summary.twinstim Man page
print.twinSIR Man page
print.twinstim Man page
profile.twinSIR Man page
profile.twinstim Man page
q1_nrwh Man page
q2 Man page
qlomax Man page
ranef Man page
ranef.hhh4 Man page
readData Man page
refvalIdxByDate Man page
reportingTriangle Man page
reportingTriangle,stsNC-method Man page
reset.surveillance.options Man page
residuals.ah Man page
residuals.ahg Man page
residuals.hhh4 Man page
residuals.simEpidataCS Man page
residuals.twinSIR Man page
residuals.twinstim Man page
ri Man page
rki Man page
rogerson Man page
rotaBB Man page
rps Man page
runifdisc Man page
s1 Man page
s2 Man page
s3 Man page
salmAllOnset Man page
salmHospitalized Man page
salmNewport Man page
salmNewportTruncated Man page
salmonella.agona Man page
scale.gpc.poly Man page
score Man page
score,stsNC-method Man page
scores Man page
scores.hhh4 Man page
scores.hhh4sims Man page
scores.hhh4simslist Man page
scores.oneStepAhead Man page
shadar Man page
siaf Man page
siaf.constant Man page
siaf.gaussian Man page
siaf.powerlaw Man page
siaf.powerlawL Man page
siaf.simulatePC Man page
siaf.step Man page
siaf.student Man page
sim.pointSource Man page
sim.seasonalNoise Man page
simEpidata Man page
simEpidataCS Man page
simHHH Man page
simHHH.ah Man page
simHHH.default Man page
simpleR0 Man page
simulate.hhh4 Man page
simulate.twinSIR Man page
simulate.twinstim Man page
stKtest Man page
stateplot Man page
stcd Man page
stepComponent Man page
sts Man page
sts-class Man page
sts2disProg Man page
stsBP-class Man page
stsNC-class Man page
sts_creation Man page
sts_observation Man page
stsplot Man page
stsplot_alarm Man page
stsplot_space Man page
stsplot_spacetime Man page
stsplot_time Man page
stsplot_time1 Man page
subset.epidataCS Man page
sumNeighbours Man page
summary.epidata Man page
summary.epidataCS Man page
summary.hhh4 Man page
summary.twinSIR Man page
summary.twinstim Man page
surveillance.options Man page
tail.epidataCS Man page
terms.hhh4 Man page
test Man page
testSim Man page
tiaf Man page
tiaf.constant Man page
tiaf.exponential Man page
tiaf.step Man page
toFileDisProg Man page
toLatex,list-method Man page
toLatex,sts-method Man page
toLatex.sts Man page
toLatex.summary.twinstim Man page
twinSIR Man page
twinstim Man page
unionSpatialPolygons Man page
untie Man page
untie.default Man page
untie.epidataCS Man page
untie.matrix Man page
update.epidata Man page
update.epidataCS Man page
update.hhh4 Man page
update.twinstim Man page
upperbound Man page
upperbound,sts-method Man page
upperbound,stsBP-method Man page
upperbound<- Man page
upperbound<-,sts-method Man page
upperbound<-,stsBP-method Man page
vcov.hhh4 Man page
vcov.twinSIR Man page
vcov.twinstim Man page
wrap.algo Man page
xtable.algoQV Man page
xtable.summary.twinstim Man page
xtable.twinstim Man page
year Man page
year,sts-method Man page
zetaweights Man page
jimhester/surveillance documentation built on May 19, 2019, 10:33 a.m.

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