algo.call: Query Transmission to Specified Surveillance Algorithm

In jimhester/surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

Description

Transmission of a object of class disProg to the specified surveillance algorithm.

Usage

    algo.call(disProgObj, control = list(
                     list(funcName = "rki1", range = range),
                     list(funcName = "rki", range = range,
                          b = 2, w = 4, actY = TRUE),
                     list(funcName = "rki", range = range,
                          b = 2, w = 5, actY = TRUE)))

Arguments

disProgObj	object of class disProg, which includes the state chain and the observed
control	specifies which surveillance algorithm should be used with their parameters. The parameter funcName and range must be specified. Here, funcName is the appropriate method function (without 'algo.') and range defines the timepoints to be evaluated by the actual system. If control includes name this name is used in the survRes Object as name.

Value

list of survRes Objects

generated by the specified surveillance algorithm

See Also

algo.rki, algo.bayes, algo.farrington

Examples

    # Create a test object
    disProg <- sim.pointSource(p = 0.99, r = 0.5, length = 400, A = 1,
                                    alpha = 1, beta = 0, phi = 0,
                                    frequency = 1, state = NULL, K = 1.7)

    # Let this object be tested from any methods in range = 200:400
    range <- 200:400
    survRes <- algo.call(disProg,
                  control = list(
                            list(funcName = "rki1", range = range),
                            list(funcName = "rki2", range = range),
                            list(funcName = "rki3", range = range),
                            list(funcName = "rki", range = range,
                                 b = 3, w = 2, actY = FALSE),
                            list(funcName = "rki", range = range,
                                 b = 2, w = 9, actY = TRUE),
                            list(funcName = "bayes1", range = range),
                            list(funcName = "bayes2", range = range),
                            list(funcName = "bayes3", range = range),
                            list(funcName = "bayes", name = "myBayes",
                                 range = range, b = 1, w = 5, actY = TRUE,alpha=0.05)
                             ) )
    # this are some survResObjects
    plot(survRes[["rki(6,6,0)"]])
    survRes[["bayes(5,5,1)"]]

jimhester/surveillance documentation built on May 19, 2019, 10:33 a.m.