Man pages for jimrperkins/NormqPCR
Functions for normalisation of RT-qPCR data
| Bladder | Bladder dataset of Andersen et al (2004) |
| BladderRepro | Dataset of Andersen et al (2004) |
| Colon | Colon dataset of Andersen et al (2004) |
| combineTechReps | Combines Technical Replicates |
| combineTechRepsSD | Combines Technical Replicates |
| ComputeNRQs | Compute Normalized Relative Quantities |
| CqValues | Compute Cq value and amplification efficiency |
| deltaCt | Perform normalization with a given housekeeping gene |
| deltaDeltaCt | Perform normalization and differential expression with given... |
| geNorm | Data set of Vandesompele et al (2002) |
| geomMean | Geometric Mean |
| makeAllNAs | Make all Cq values NA |
| makeAllNewVal | Make all Cq values NA |
| NormqPCR-package | Functions for normalisation of RT-qPCR data. |
| replaceAboveCutOff | Replace Cq values with new value |
| replaceNAs | Replace NAs with a given value |
| selectHKs | Selection of reference/housekeeping genes |
| stabMeasureM | Gene expression stability value M |
| stabMeasureRho | Gene expression stability value rho |
