CyclesSet-class: Class CyclesSet

In jimrperkins/ReadqPCR: Read qPCR data

Description

Class to contain and describe raw fluorescence data. Extends eSet

Creating Objects

new("CyclesSet")

Slots

assayData:

Object of class AssayData containing the raw data, which will be a matrix of fluorescence values.

phenoData:

Object of class AnnotatedDataFrame containing phenotypic data for the samples.

annotation

A character string identifying the annotation that may be used for the CyclesSet instance.

protocolData:

Object of class AnnotatedDataFrame containing protocol data for the samples.

featureData

Object of class AnnotatedDataFrame containing feature-level (e.g., probeset-level) information.

experimentData:

Object of class "MIAME" containing experiment-level information.

.__classVersion__:

Object of class Versions describing the R and Biobase version number used to create the instance. Intended for developer use.

Methods

exprs

signature(object = "CyclesSet"): extracts the matrix with the fluorescence values.

exprs<-

signature(object = "CyclesSet", value = "matrix"): replaces the matrix with the fluorescence values.

Author(s)

Nor Izayu Abdul Rahman, Matthias Kohl [e-mail]

References

Perkins, JR, Dawes, JM, McMahon, SB, Bennett, DL, Orengo, C, Kohl, M (2012). ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq) data. BMC Genomics, 13, 1:296.

See Also

eSet

jimrperkins/ReadqPCR documentation built on March 30, 2020, 10:23 p.m.