jingeyu/CSSN: Recovering spatially-varying cell-specific gene co-expression networks for single-cell spatial expression data.
The R package CSSN implements the two-step algorithm proposed by Jinge Yu and Xiangyu Luo that recovers spatially-varying cell-specific gene co-expression networks for single-cell spatial expression data. The packages aim to provide estimates for cell-specific gene co-expression networks as well as network predictions in tissue locations where cells are missing. CSSN can be installed in Windows, Linux, and Mac OS.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Jinge Yu, Xiangyu Luo |
| Bioconductor views | GeneExpression GraphAndNetwork Normalization StatisticalMethod |
| Maintainer | Jinge Yu <yjgruc@ruc.edu.cn> |
| License | GPL (>= 2) |
| Version | 0.99.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
