Description Usage Arguments Value
View source: R/create_eqtl_input_h5.R
Use in-memory objects to add gene information to a given HDF5 file
1 2 3 | add_gene_info_h5(file_name = NULL, gene_info = NULL, id_col = "id",
chr_col = "chromosome", start_col = "start", end_col = "end",
entrez_col = NULL, symbol_col = NULL)
|
file_name |
Name of the HDF5 file to add the information to |
gene_info |
Dataframe with gene information for all genes present in genotypes/matrix |
id_col |
Column name of gene_info that contains id information |
chr_col |
Column name of gene_info that contains chromosome information |
start_col |
Column name of gene_info that contains start positions |
end_col |
Column name of gene_info that contains end positions |
entrez_col |
Column name of gene_info that contains entrez ids |
symbol_col |
Column name of gene_info that contains gene symbols |
Saves the given objects into the hdf5 generated by the create_eqtl_input_h5() function.
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