add_gene_info_h5: Adding gene information to an HDF5 file

In jinhyunju/eQTLtools: What the package does (one line)

Description

Use in-memory objects to add gene information to a given HDF5 file

Usage

add_gene_info_h5(file_name = NULL, gene_info = NULL, id_col = "id",
  chr_col = "chromosome", start_col = "start", end_col = "end",
  entrez_col = NULL, symbol_col = NULL)

Arguments

file_name	Name of the HDF5 file to add the information to
gene_info	Dataframe with gene information for all genes present in genotypes/matrix
id_col	Column name of gene_info that contains id information
chr_col	Column name of gene_info that contains chromosome information
start_col	Column name of gene_info that contains start positions
end_col	Column name of gene_info that contains end positions
entrez_col	Column name of gene_info that contains entrez ids
symbol_col	Column name of gene_info that contains gene symbols

Value

Saves the given objects into the hdf5 generated by the create_eqtl_input_h5() function.

jinhyunju/eQTLtools documentation built on May 19, 2019, 10:35 a.m.