hf_sim: Simulating hidden factor effects

In jinhyunju/eQTLtools: What the package does (one line)

Description

Generates a phenotype matrix based on a given input genotype matrix.

Usage

hf_sim(n.genes, n.samples, hf.type = c("sparse", "normal", "uniform"),
  coeff.dist = c("normal", "uniform", "binom"), fraction.affected = 0.2,
  binom.prob = 0.4, factor.effect.size = 2)

Arguments

n.genes	Number of genes in the original phenotype matrix.
n.samples	Number of samples in the original phenotype matrix
fraction.affected	Fraction of genes affected by the hidden factor.

Value

hidden factor matrix with dimensions n.samples x n.genes

jinhyunju/eQTLtools documentation built on May 19, 2019, 10:35 a.m.