read_fasta: fasta batch Biostrings

In jjlinscientist/useful_R_functions: What the Package Does (One Line, Title Case)

Description

extract DNAStringSet data from a batch of fasta files: requires package Biostrings

Usage

read_fasta(files, is_RNA = FALSE, output_list = FALSE)

Arguments

files	path or list of paths to fasta files
is_RNA	logical argument to use RNAStringSet - default is FALSE
output_list	logical argument to concatenate list of XStringSets - default is FALSE

Examples

read_fasta(files = c("path/to/example1.fa", "path/to/example2.fa"), is_RNA = FALSE, output_list = FALSE)

jjlinscientist/useful_R_functions documentation built on May 17, 2019, 10:38 a.m.