getGeneList: To get gene feature from a GTF file
In jknightlab/AltHapAlignR: AltHapAlignR: Haplotype-specific mapping in RNA-seq
Description
Usage
Arguments
Examples
Description
To get gene feature from a GTF file
Usage
1
getGeneList(gtf, type = "protein_coding")
Arguments
gtf
GTF file
type
selecting gene feature
Examples
1
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3
4
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6
gtf=system.file("extdata", "gencode.v21.chr_patch_hapl_HLA.annotation.gtf",
package = "AltHapAlignR")
output <- getGeneList(gtf, type="protein_coding")
# Output data
# summary of gene information, format: data.frame
jknightlab/AltHapAlignR documentation built on Sept. 11, 2019, 9:02 p.m.
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Description Usage Arguments Examples
Description
To get gene feature from a GTF file
Usage
1 | getGeneList(gtf, type = "protein_coding")
|
Arguments
gtf |
GTF file |
type |
selecting gene feature |
Examples
1 2 3 4 5 6 | gtf=system.file("extdata", "gencode.v21.chr_patch_hapl_HLA.annotation.gtf",
package = "AltHapAlignR")
output <- getGeneList(gtf, type="protein_coding")
# Output data
# summary of gene information, format: data.frame
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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