heatmapByShortestPaths: To predict shortest path
In jknightlab/AltHapAlignR: AltHapAlignR: Haplotype-specific mapping in RNA-seq
Description
To predict shortest path
Usage
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heatmapByShortestPaths(paired_mapping_rates, gtf, hap_names = c("apd", "cox",
"dbb", "mann", "mcf", "pgf", "qbl", "ssto"), penalty = 1,
sample_name = "sample_name")
Arguments
paired_mapping_rates
output from 'predictRecombHapByGenes'
gtf
a gtf file name containing gene feature of all haplotypes
hap_names
haplotype names matching to column names (eg. c("apd", "cox", "dbb", "mann", "mcf", "pgf", "qbl", "ssto") )
penalty
1: penalty applied, 0: penalty not applied
sample_name
output file name
jknightlab/AltHapAlignR documentation built on Sept. 11, 2019, 9:02 p.m.
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Description
To predict shortest path
Usage
1 2 3 | heatmapByShortestPaths(paired_mapping_rates, gtf, hap_names = c("apd", "cox",
"dbb", "mann", "mcf", "pgf", "qbl", "ssto"), penalty = 1,
sample_name = "sample_name")
|
Arguments
paired_mapping_rates |
output from 'predictRecombHapByGenes' |
gtf |
a gtf file name containing gene feature of all haplotypes |
hap_names |
haplotype names matching to column names (eg. c("apd", "cox", "dbb", "mann", "mcf", "pgf", "qbl", "ssto") ) |
penalty |
1: penalty applied, 0: penalty not applied |
sample_name |
output file name |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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