README.md

In jleelab/leeplyr: A set of internal Lee lab tools ("plyers").

leeplyr

How to install

Open up R and run the following code:

if (!require(devtools)) {
  install.packages("devtools")
}
devtools::install_github("jleelab/leeplyr")

Then load the package:

library(leeplyr)

Try out some commands:

cytosol.folder<-system.file('roi/RoiSet_cytosol', package='leeplyr')
nuclei.folder<-system.file('roi/RoiSet_nuclei', package='leeplyr')
transcripts<-system.file('fisseq/res_001_001FISSEQ.out', package='leeplyr')
mapped<-map.to.roi(transcripts, roi.folder = c(cytosol.folder, nuclei.folder), roi.labels =  c('cytoplasm', 'nucleus'), OR.cutoff = 5, p.value.cutoff = 20)

jleelab/leeplyr documentation built on May 3, 2019, 9:38 p.m.