Open up R and run the following code:
if (!require(devtools)) {
install.packages("devtools")
}
devtools::install_github("jleelab/leeplyr")
Then load the package:
library(leeplyr)
Try out some commands:
cytosol.folder<-system.file('roi/RoiSet_cytosol', package='leeplyr')
nuclei.folder<-system.file('roi/RoiSet_nuclei', package='leeplyr')
transcripts<-system.file('fisseq/res_001_001FISSEQ.out', package='leeplyr')
mapped<-map.to.roi(transcripts, roi.folder = c(cytosol.folder, nuclei.folder), roi.labels = c('cytoplasm', 'nucleus'), OR.cutoff = 5, p.value.cutoff = 20)
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