map.to.polarity: Map polarity
In jleelab/leeplyr: A set of internal Lee lab tools ("plyers").

Description Usage Arguments Examples

Uses PCA to map polarity of transcripts given an ROI.

1	map.to.polarity(transcripts, contour, plot = TRUE)

`transcripts`	FISSEQ readr output tsv file path or a tibble object or data frame.
`contour`	data frame, a polygon data frame with list items x, y, and id.
`plot`	boolean, if the result should be displayed.

nuclei.folder<-system.file('roi/RoiSet_nuclei', package='leeplyr')
contour<-get.rois(nuclei.folder)
transcripts<-system.file('fisseq/res_001_001FISSEQ.out', package='leeplyr')
polarity<-map.to.polarity(transcripts, contour, plot = TRUE)