Files in jlivsey/countsFun

.DS_Store

.gitignore

DESCRIPTION

NAMESPACE

R/AllFunctions.R R/GaussianLikFunctions.R R/lgc.R README.md Sims/TestSimulationScheme.R archived R/AllFunctions.R archived R/CheckInputSpecs.R archived R/DLalg.R archived R/GaussianLik-functions.R archived R/IYW.R archived R/InAlgFunctions.R archived R/LGCSimulation.R archived R/LikSISGenDist_ARp.R archived R/LikSISGenDist_ARp_Res.R archived R/LikSIS_ARpGenDist_functions.R archived R/MixedPoisson_GL.R archived R/MixedPoisson_IYW.R archived R/MixedPoisson_PF.R archived R/NegBinMA1_GL.R archived R/NegBin_GL.R archived R/NegBin_PF.R archived R/NegBin_PF_Res.R archived R/PITold.R archived R/ParticleFitler-functions.R archived R/PoisAR1_GL.R archived R/PoisAR1_PF.R archived R/approx-functions.R archived R/fixedLambda-functions.R archived R/genpoisson-functions.R archived R/likSIS.R archived R/likSISMA1.R archived R/likSISRAR1.R archived R/likSISRMA1.R archived R/likSISRMA1Old.R archived R/log_fi.R archived R/mixedPoisson-functions.R archived R/mixpoisson-functions.R archived R/myPIT.R archived R/negBinom-functions.R archived R/negBinom-pop-psuedo-lik.R archived R/negBinom-pop-psuedo-lik2.R archived R/poisson-functions.R archived R/pop-psuedo-lik.R archived R/pop-psuedo-lik2.R

archived R/sysdata.rda

archived extra/GL-SE/investigate.R archived extra/sandwich-CI-coverage/2020-04-30 notes.pdf

archived extra/sandwich-CI-coverage/Psuedo code for sim

archived extra/sandwich-CI-coverage/Rplot.pdf archived extra/sandwich-CI-coverage/Rplot2.pdf archived extra/sandwich-CI-coverage/Rplot3.pdf archived extra/sandwich-CI-coverage/function-sim-fixedPhi.R archived extra/sandwich-CI-coverage/function-sim.R archived extra/sandwich-CI-coverage/plots.R

archived extra/sandwich-CI-coverage/sandwich_lam1_phi0fixed.Rdata

archived extra/sandwich-CI-coverage/sandwich_lam1_phi0fixed.pdf

archived extra/sandwich-CI-coverage/sandwich_lam1_phiPt5.Rdata

archived extra/sandwich-CI-coverage/sandwich_lam1_phiPt5.pdf

archived extra/sandwich-CI-coverage/sandwich_lam30_phi0fixed.Rdata

archived extra/sandwich-CI-coverage/sandwich_lam30_phi0fixed.pdf

archived extra/sandwich-CI-coverage/sandwich_lam30_phiPt5.Rdata

archived extra/sandwich-CI-coverage/sandwich_lam30_phiPt5.pdf archived extra/sandwich-CI-coverage/test-sim-fixedPhi.R archived extra/sandwich-CI-coverage/test-sim.R archived plots/CompareACFs.R archived plots/Plots_PoisAR1_Revised.R

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_10AR1_GL_N100_NS200_NotTrue.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_10AR1_GL_N100_NS200_True.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_10AR1_GL_N200_NS200_NotTrue.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_10AR1_GL_N200_NS200_True.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_10AR1_GL_N400_NS200_NotTrue.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_10AR1_GL_N400_NS200_True.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_5AR1_GL_N100_NS200_NotTrue.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_5AR1_GL_N100_NS200_True.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_5AR1_GL_N200_NS200_NotTrue.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_5AR1_GL_N200_NS200_True.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_5AR1_GL_N400_NS200_NotTrue.RData

archived sims/MixedPoissonAR1/GL/RData/MixedPoisson0.25_2_5AR1_GL_N400_NS200_True.RData

archived sims/MixedPoissonAR1/GL/SimulationWrapper_MP_GL.R archived sims/MixedPoissonAR1/GL/generate.R archived sims/MixedPoissonAR1/GL/simulation_function.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-10AR1_IYW_N100_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-10AR1_IYW_N100_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-10AR1_IYW_N200_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-10AR1_IYW_N200_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-10AR1_IYW_N400_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-10AR1_IYW_N400_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-3AR1_IYW_N100_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-3AR1_IYW_N100_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-3AR1_IYW_N200_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-3AR1_IYW_N200_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-3AR1_IYW_N400_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-3AR1_IYW_N400_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-5AR1_IYW_N100_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-5AR1_IYW_N100_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-5AR1_IYW_N200_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-5AR1_IYW_N200_NS200_PhiPos.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-5AR1_IYW_N400_NS200_PhiNeg.R archived sims/MixedPoissonAR1/IYW/GeneratedFiles/MixedPois2-5AR1_IYW_N400_NS200_PhiPos.R

archived sims/MixedPoissonAR1/IYW/RData/MixedPoisson0.25_2_10AR1_IYW_N100_NS200.RData

archived sims/MixedPoissonAR1/IYW/RData/MixedPoisson0.25_2_10AR1_IYW_N200_NS200.RData

archived sims/MixedPoissonAR1/IYW/RData/MixedPoisson0.25_2_10AR1_IYW_N400_NS200.RData

archived sims/MixedPoissonAR1/IYW/RData/MixedPoisson0.25_2_5AR1_IYW_N100_NS200.RData

archived sims/MixedPoissonAR1/IYW/RData/MixedPoisson0.25_2_5AR1_IYW_N200_NS200.RData

archived sims/MixedPoissonAR1/IYW/RData/MixedPoisson0.25_2_5AR1_IYW_N400_NS200.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-10AR1_IYW_N100_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-10AR1_IYW_N100_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-10AR1_IYW_N200_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-10AR1_IYW_N200_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-10AR1_IYW_N400_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-10AR1_IYW_N400_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-3AR1_IYW_N100_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-3AR1_IYW_N100_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-3AR1_IYW_N200_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-3AR1_IYW_N200_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-3AR1_IYW_N400_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-3AR1_IYW_N400_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-5AR1_IYW_N100_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-5AR1_IYW_N100_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-5AR1_IYW_N200_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-5AR1_IYW_N200_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-5AR1_IYW_N400_NS200_PhiNeg.RData

archived sims/MixedPoissonAR1/IYW/RData/old/MixedPois2-5AR1_IYW_N400_NS200_PhiPos.RData

archived sims/MixedPoissonAR1/IYW/Simulation_Wrapper_IYW_MP.R archived sims/MixedPoissonAR1/IYW/generate.R archived sims/MixedPoissonAR1/IYW/simulation_function.R

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_10AR1_PF_N100_NS200_Part100_e0.5.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_10AR1_PF_N100_NS200_Part100_e1.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_10AR1_PF_N200_NS200_Part100_e0.5.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_10AR1_PF_N200_NS200_Part100_e1.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_10AR1_PF_N400_NS200_Part100_e0.5.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_10AR1_PF_N400_NS200_Part100_e1.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_5AR1_PF_N100_NS200_Part100_e0.5.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_5AR1_PF_N100_NS200_Part100_e1.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_5AR1_PF_N200_NS200_Part100_e0.5.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_5AR1_PF_N200_NS200_Part100_e1.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_5AR1_PF_N400_NS200_Part100_e0.5.RData

archived sims/MixedPoissonAR1/PF/RData/MixedPoisson0.25_2_5AR1_PF_N400_NS200_Part100_e1.RData

archived sims/MixedPoissonAR1/PF/Simulation_Wrapper_MP_PF.R archived sims/MixedPoissonAR1/PaperPlot/MixedPoisson2_10_2.5AR1phiPos75.pdf archived sims/MixedPoissonAR1/PaperPlot/Plots_MixedPoisAR1.R archived sims/MixedPoissonAR1/PaperPlot/Plots_MixedPoisAR1_Enhanced.R archived sims/MixedPoissonAR1/PaperPlot/Plots_MixedPoisAR1_old.R

archived sims/NegBinMA1/GL/RData/NegBin3_0.2MA1_GL_N100_NS200_ThetaNeg.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.2MA1_GL_N100_NS200_ThetaPos.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.2MA1_GL_N200_NS200_ThetaNeg.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.2MA1_GL_N200_NS200_ThetaPos.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.2MA1_GL_N400_NS200_ThetaNeg.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.2MA1_GL_N400_NS200_ThetaPos.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N100_NS200_ThetaNeg.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N100_NS200_ThetaNeg_NotTrue.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N100_NS200_ThetaPos.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N100_NS200_ThetaPos_NotTrue.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N200_NS200_ThetaNeg.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N200_NS200_ThetaNeg_NotTrue.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N200_NS200_ThetaPos.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N200_NS200_ThetaPos_NotTrue.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N400_NS200_ThetaNeg.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N400_NS200_ThetaNeg_NotTrue.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N400_NS200_ThetaPos.RData

archived sims/NegBinMA1/GL/RData/NegBin3_0.8MA1_GL_N400_NS200_ThetaPos_NotTrue.RData

archived sims/NegBinMA1/GL/SimulationWrapper_NBMA_GL.R archived sims/NegBinMA1/GL/SimulationWrapper_NB_GL.R

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part1000_ThetaNeg_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part1000_ThetaNeg_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part1000_ThetaPos_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part1000_ThetaPos_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part100_ThetaNeg_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part100_ThetaPos_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N100_NS200_Part100_ThetaPos_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part1000_ThetaNeg_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part1000_ThetaNeg_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part1000_ThetaPos_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part1000_ThetaPos_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part100_ThetaNeg_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part100_ThetaPos_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N200_NS200_Part100_ThetaPos_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part1000_ThetaNeg_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part1000_ThetaNeg_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part1000_ThetaPos_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part1000_ThetaPos_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part100_ThetaNeg_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part100_ThetaNeg_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part100_ThetaPos_e0.5.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part100_ThetaPos_e1.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part10_ThetaNeg_e1_Deopt.RData

archived sims/NegBinMA1/PF/RData/NegBin3_0.8MA1_PF_N400_NS200_Part10_ThetaPos_e1_Deopt.RData

archived sims/NegBinMA1/PF/SimulationWrapper_NBPF.R archived sims/NegBinMA1/PF/SimulationWrapper_NBPF_NotTrue.R archived sims/NegBinMA1/PF/SimulationWrapper_NBPF_Res_NotTrue.R archived sims/NegBinMA1/PaperPlot/NegBin3_2.5Theta75Pos.pdf archived sims/NegBinMA1/PaperPlot/NegBin3_8Theta-75Neg.pdf archived sims/NegBinMA1/PaperPlot/NegBin3_8Theta75.pdf archived sims/NegBinMA1/PaperPlot/NegBin3_8Theta75Pos.pdf archived sims/NegBinMA1/PaperPlot/NegBin3_8ThetaNeg75.pdf archived sims/NegBinMA1/PaperPlot/NegBin3_8ThetaPos75.pdf archived sims/NegBinMA1/PaperPlot/PlotsNegBin3_2_Revised.R archived sims/PoissonAR1/GL/IndividualSimFiles/PoisAR1_GL_N100_NS200_PhiNeg.R archived sims/PoissonAR1/GL/IndividualSimFiles/PoisAR1_GL_N100_NS200_PhiPos.R archived sims/PoissonAR1/GL/IndividualSimFiles/PoisAR1_GL_N200_NS200_PhiNeg.R archived sims/PoissonAR1/GL/IndividualSimFiles/PoisAR1_GL_N200_NS200_PhiPos.R archived sims/PoissonAR1/GL/IndividualSimFiles/PoisAR1_GL_N400_NS200_PhiNeg.R archived sims/PoissonAR1/GL/IndividualSimFiles/PoisAR1_GL_N400_NS200_PhiPos.R

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N1000_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N1000_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N100_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N100_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N200_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N200_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N400_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/Pois10AR1_GL_N400_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/RData/PoisAR1_GL_N100_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/PoisAR1_GL_N100_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/RData/PoisAR1_GL_N200_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/PoisAR1_GL_N200_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/RData/PoisAR1_GL_N400_NS200_PhiNeg.RData

archived sims/PoissonAR1/GL/RData/PoisAR1_GL_N400_NS200_PhiPos.RData

archived sims/PoissonAR1/GL/SimulationWrapper_GL.R archived sims/PoissonAR1/GL/SimulationWrapper_GL_1k.R archived sims/PoissonAR1/GL/SimulationWrapper_GL_5k.R archived sims/PoissonAR1/IYW/Pois10AR1_IYW_N100_NS200_PhiNeg.R archived sims/PoissonAR1/IYW/Pois10AR1_IYW_N100_NS200_PhiPos.R archived sims/PoissonAR1/IYW/Pois10AR1_IYW_N200_NS200_PhiNeg.R archived sims/PoissonAR1/IYW/Pois10AR1_IYW_N200_NS200_PhiPos.R archived sims/PoissonAR1/IYW/Pois10AR1_IYW_N400_NS200_PhiNeg.R archived sims/PoissonAR1/IYW/Pois10AR1_IYW_N400_NS200_PhiPos.R archived sims/PoissonAR1/IYW/PoisAR1_IYW_N100_NS200_PhiNeg.R archived sims/PoissonAR1/IYW/PoisAR1_IYW_N100_NS200_PhiPos.R archived sims/PoissonAR1/IYW/PoisAR1_IYW_N200_NS200_PhiNeg.R archived sims/PoissonAR1/IYW/PoisAR1_IYW_N200_NS200_PhiPos.R archived sims/PoissonAR1/IYW/PoisAR1_IYW_N400_NS200_PhiNeg.R archived sims/PoissonAR1/IYW/PoisAR1_IYW_N400_NS200_PhiPos.R

archived sims/PoissonAR1/IYW/RData/Pois10AR1_IYW_N100_NS200_PhiNeg.RData

archived sims/PoissonAR1/IYW/RData/Pois10AR1_IYW_N100_NS200_PhiPos.RData

archived sims/PoissonAR1/IYW/RData/Pois10AR1_IYW_N200_NS200_PhiNeg.RData

archived sims/PoissonAR1/IYW/RData/Pois10AR1_IYW_N200_NS200_PhiPos.RData

archived sims/PoissonAR1/IYW/RData/Pois10AR1_IYW_N400_NS200_PhiNeg.RData

archived sims/PoissonAR1/IYW/RData/Pois10AR1_IYW_N400_NS200_PhiPos.RData

archived sims/PoissonAR1/IYW/RData/PoisAR1_IYW_N100_NS200_PhiNeg.RData

archived sims/PoissonAR1/IYW/RData/PoisAR1_IYW_N100_NS200_PhiPos.RData

archived sims/PoissonAR1/IYW/RData/PoisAR1_IYW_N200_NS200_PhiNeg.RData

archived sims/PoissonAR1/IYW/RData/PoisAR1_IYW_N200_NS200_PhiPos.RData

archived sims/PoissonAR1/IYW/RData/PoisAR1_IYW_N400_NS200_PhiNeg.RData

archived sims/PoissonAR1/IYW/RData/PoisAR1_IYW_N400_NS200_PhiPos.RData

archived sims/PoissonAR1/IYW/load.R archived sims/PoissonAR1/IYW/run.R archived sims/PoissonAR1/IYW/run_lam10.R archived sims/PoissonAR1/PF/IndividualSimFiles/PoisAR1_PF_N100_NS200_Part100_PhiNeg.R archived sims/PoissonAR1/PF/IndividualSimFiles/PoisAR1_PF_N100_NS200_Part100_PhiPos.R archived sims/PoissonAR1/PF/IndividualSimFiles/PoisAR1_PF_N200_NS200_Part100_PhiNeg.R archived sims/PoissonAR1/PF/IndividualSimFiles/PoisAR1_PF_N200_NS200_Part100_PhiPos.R archived sims/PoissonAR1/PF/IndividualSimFiles/PoisAR1_PF_N400_NS200_Part100_PhiNeg.R archived sims/PoissonAR1/PF/IndividualSimFiles/PoisAR1_PF_N400_NS200_Part100_PhiPos.R

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N100_NS200_Part1000_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N100_NS200_Part100_PhiNeg.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N100_NS200_Part100_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N200_NS200_Part1000_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N200_NS200_Part100_PhiNeg.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N200_NS200_Part100_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N400_NS200_Part1000_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N400_NS200_Part100_PhiNeg.RData

archived sims/PoissonAR1/PF/RData/Pois10AR1_PF_N400_NS200_Part100_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N100_NS200_Part1000_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N100_NS200_Part100_PhiNeg.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N100_NS200_Part100_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N200_NS200_Part1000_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N200_NS200_Part100_PhiNeg.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N200_NS200_Part100_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N400_NS200_Part1000_PhiPos.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N400_NS200_Part100_PhiNeg.RData

archived sims/PoissonAR1/PF/RData/Pois2AR1_PF_N400_NS200_Part100_PhiPos.RData

archived sims/PoissonAR1/PF/SimulationWrapper_PF.R archived sims/PoissonAR1/PaperPlot/PAR1lam2phiNeg75.pdf archived sims/PoissonAR1/PaperPlot/PAR1lam2phiPos75.pdf archived sims/PoissonAR1/PaperPlot/Plots_Pois10AR1_GL1k_Revised.R archived sims/PoissonAR1/PaperPlot/Plots_Pois10AR1_Revised.R archived sims/PoissonAR1/PaperPlot/Plots_PoisAR1_Revised.R archived sims/PoissonAR1/PaperPlot/Pois10AR1lam2phiNeg75.pdf archived sims/PoissonAR1/PaperPlot/Pois10AR1lam2phiPos75.pdf archived sims/PoissonAR1/PaperPlot/Pois10AR1phiNeg75.pdf archived sims/PoissonAR1/PaperPlot/Pois10AR1phiPos75.pdf archived sims/PoissonAR1/PaperPlot/Pois2AR1phiNeg75.pdf archived sims/PoissonAR1/PaperPlot/Pois2AR1phiPos75.pdf archived tests/CheckPredDist.R archived tests/Compare/CompareNewOldLikSisMA1.R archived tests/Compare/CompareNewOldLikSis_MixPoisAR1.R archived tests/Compare/CompareNewOldLikSis_MixPoisAR1NoRes.R archived tests/Compare/CompareNewOldPredDistAR1Pois-2.R archived tests/Compare/CompareNewOldPredDistAR1Pois.R archived tests/Demo/DemoGaussianLikSim.R archived tests/Demo/DemoGaussianLikSim_fixedLambda.R archived tests/Demo/DemoGenPois_Reg.R archived tests/Demo/DemoInitMLE_MixedPois.R archived tests/Demo/DemoInitNB.R archived tests/Demo/DemoNegBinCovariates.R archived tests/Demo/DemoNegBin_GL_Models1-2.R archived tests/Demo/DemoPFGenPoisReg.R archived tests/DominickGenPois_GL.R archived tests/DominickGenPois_PF.R archived tests/DominickNegBin_GL.R archived tests/DominickNegBin_PF.R archived tests/DominickPredDist.R archived tests/FitDominick.R archived tests/FitDominickSmall.R archived tests/GL-comparison/GL-comparison.R archived tests/OldGenPoissonFunctions.R archived tests/PlotDominick.R archived tests/ResidualsDom.R archived tests/TestFinalWrapper.R archived tests/TestLikSISRMA1.R archived tests/TryGMM.R archived tests/fitDominick-breakdown.R archived tests/gaussLikSim.R archived tests/gaussLikSim_fixedLambda.R archived tests/plot-results-gaussLikSim.R archived tests/sandwich_NegBinom_AR1.R archived tests/test-mixedPois_MLE.R archived tests/test-negBinom-pop-psudeo-lik.R archived tests/test-negBinom-pop-psudeo-lik2.R archived tests/test-pop-psuedo-lik.R archived tests/test-pop-psuedo-lik2.R archived tests/testGamma.R

countsFun.Rproj

data/MySelectedSeries.csv

data/SimPois2_AR1_075_N1k.csv

tests/CompareDerivativeMethod3.R tests/CompareInnovAlgorithms.R tests/DemoAutomaticDiff.R tests/DemoCommonRandomNumbers.R tests/MixedPois/Evaluation/test_MP_AR_1.R tests/NegBin/Evaluation/Test_PF_ARMA_2.R tests/NegBin/Evaluation/Test_PF_ARMA_3.R tests/NegBin/Evaluation/test_NB_2_3.R tests/PF_AR_d.R tests/Poisson/Evaluation/test_PO_2_3.R tests/TestFinalWrapper.R tests/TestInnovAlgITSMR.R tests/TestSyntheticData.R tests/TestSyntheticData2.R tests/TestSyntheticData3.R tests/TestSyntheticData4.R tests/Test_PF_ARMA_1.R tests/Test_PF_ARMA_2.R tests/Test_PF_ARMA_3.R tests/UnitTest_1.R tests/UnitTest_1_Draft.R tests/mygammainc.R tests/tryCatchDemo.R

jlivsey/countsFun documentation built on March 9, 2023, 5:19 p.m.