API for jmacdon/affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
| Global functions | |
|---|---|
| .dataFromNetaffx | Source code |
| .makeFullDf | Source code |
| .onLoad | Source code |
| addAnnot | Source code |
| addLines | Source code |
| affyLinks | Man page Source code |
| affycoretools | Man page |
| affycoretools-defunct | Man page |
| affystart | Man page Source code |
| allToMat | Source code |
| annBM | Man page Source code |
| annotateEset | Man page |
| annotateEset,ExpressionSet,AffyExonPDInfo-method | Man page |
| annotateEset,ExpressionSet,AffyExpressionPDInfo-method | Man page |
| annotateEset,ExpressionSet,AffyGenePDInfo-method | Man page |
| annotateEset,ExpressionSet,AffyHTAPDInfo-method | Man page |
| annotateEset,ExpressionSet,ChipDb-method | Man page |
| annotateEset,ExpressionSet,character-method | Man page |
| annotateEset,ExpressionSet,data.frame-method | Man page |
| colvec | Source code |
| convertIDs | Source code |
| dataAndHeatmapPage | Man page Source code |
| doGlimma | Man page Source code |
| drawVenn | Source code |
| ensemblLinks | Man page Source code |
| entrezLinks | Man page |
| fixHeaderAndGo | Man page Source code |
| foldFilt | Man page Source code |
| foldFiltBM | Man page Source code |
| geneSetPage | Man page Source code |
| getCols | Man page Source code |
| getMainProbes | Man page Source code |
| goLinks | Man page Source code |
| gsHeatmap | Man page Source code |
| hyperG2annaffy | Man page Source code |
| hyperGoutput | Man page Source code |
| inLineVennLinks | Source code |
| intNames | Man page Source code |
| limma2annaffy | Man page Source code |
| limma2biomaRt | Man page Source code |
| listToVector | Source code |
| make.cl | Man page Source code |
| makeGoGeneTable | Man page Source code |
| makeGoTable | Man page Source code |
| makeHmap | Man page Source code |
| makeImages | Man page Source code |
| makeIndices | Man page Source code |
| makeVenn | Man page |
| makeVenn,DGEGLM-method | Man page |
| makeVenn,MArrayLM-method | Man page |
| maplot | Man page Source code |
| mirna2mrna | Man page Source code |
| nuccoreLinks | Man page Source code |
| outPut | Source code |
| outputRomer | Man page |
| outputRomer,DGEList,DGEGLM-method | Man page |
| outputRomer,EList,MArrayLM-method | Man page |
| outputRomer,ExpressionSet,MArrayLM-method | Man page |
| pca.legend | Man page Source code |
| pcaPCH | Source code |
| plotDeg | Man page Source code |
| plotHist | Man page Source code |
| plotPCA | Man page |
| plotPCA,ExpressionSet-method | Man page |
| plotPCA,matrix-method | Man page |
| probes2table | Man page Source code |
| probes2tableBM | Man page Source code |
| queryMaker | Source code |
| remove.axis.and.padding | Source code |
| runRomer | Man page |
| runRomer,DGEList-method | Man page |
| runRomer,EList-method | Man page |
| runRomer,ExpressionSet-method | Man page |
| tableFilt | Man page Source code |
| theme_blank | Source code |
| venn4Way | Man page Source code |
| vennCounts2 | Man page Source code |
| vennInLine | Man page Source code |
| vennLinks | Source code |
| vennPage | Man page Source code |
| vennSelect | Man page Source code |
| vennSelect2 | Man page Source code |
| vennSelectBM | Man page Source code |
| vennSelectFC | Man page Source code |
| whichMains | Source code |
| writeFit | Man page Source code |
