plotDeg: Functions to Plot Density and RNA Degradation Plots

In jmacdon/affycoretools: Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Functions to Plot Density and RNA Degradation Plots

Description

These functions make density and RNA degradation plots with automatic placement of legends.

Usage

plotDeg(dat, filenames = NULL)

Arguments

dat	An AffyBatch object, or in the case of plotHist, a matrix (e.g., from a call to read.probematrix. Note that plotDeg requires an AffyBatch object to work correctly.
filenames	Filenames that will be used in the legend of the resulting plot. If NULL (the default), these names will be extracted from the sampleNames slot of the AffyBatch object.

Value

These functions are called only for the side effect of making the plots. Nothing else is returned.

Author(s)

James W. MacDonald <[e-mail]>

Examples

library("affydata")
data(Dilution)
plotDeg(Dilution)
plotHist(Dilution)

jmacdon/affycoretools documentation built on Nov. 2, 2024, 1:29 a.m.