Description Usage Arguments Details Value Author(s)
Generate sex-stratified dotplot of methylation for a given region.
1 2 |
samps |
A data.frame that maps samples to phenotype. There must be both a Category and Gender column. |
bumpavg |
Mean methylation data, usually from a call
to |
dontuse |
Category levels that are not to be used in the dotplot. If there are only two levels, use "". |
stratifyBySex |
Boolean. Should the dotplot be
stratified by sex? Defaults to |
extra.indeps |
Are we fitting a model with extra independent variables? This must be a character vector, and all values must be column names for the samps data.frame. |
This is an internal function and not intended for direct use. This is intended to create a dotplot stratified by sex, to show the mean methylation for a given region of the genome, presumably because there is differential methylation for at least on sex.
Nothing is returned. Only called for the side effect of creating a dotplot.
James W. MacDonald (jmacdon@u.washington.edu)
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