getMeans: Get mean methylation data
In jmacdon/methylation: Package to analyze methylation data from Illumina 450K arrays
Description
Usage
Arguments
Details
Value
Author(s)
Description
Compute means from methylation data
Usage
1
getMeans(bmptab, eset)
Arguments
bmptab
The table item from a bumps object created
from running bumphunter on methylation data
eset
A GenomicRatioSet or MethylSet.
Details
This function is an internal function and not intended for
use by end users. The purpose is to compute mean
methylation data that will be used for creating dotplots
Value
A data.frame containing the mean expression for all probes
within all differentially methylated regions.
Author(s)
James W. MacDonald (jmacdon@u.washington.edu)
jmacdon/methylation documentation built on May 19, 2019, 12:49 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Compute means from methylation data
Usage
1 | getMeans(bmptab, eset)
|
Arguments
bmptab |
The table item from a bumps object created
from running |
eset |
A GenomicRatioSet or MethylSet. |
Details
This function is an internal function and not intended for use by end users. The purpose is to compute mean methylation data that will be used for creating dotplots
Value
A data.frame containing the mean expression for all probes within all differentially methylated regions.
Author(s)
James W. MacDonald (jmacdon@u.washington.edu)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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