getMeans: Get mean methylation data

Description Usage Arguments Details Value Author(s)

Description

Compute means from methylation data

Usage

1
getMeans(bmptab, eset)

Arguments

bmptab

The table item from a bumps object created from running bumphunter on methylation data

eset

A GenomicRatioSet or MethylSet.

Details

This function is an internal function and not intended for use by end users. The purpose is to compute mean methylation data that will be used for creating dotplots

Value

A data.frame containing the mean expression for all probes within all differentially methylated regions.

Author(s)

James W. MacDonald ([email protected])


jmacdon/methylation documentation built on May 19, 2019, 12:49 p.m.