anno: Example annotation file for three pathways.

In jmanitz/kangar00: Kernel Approaches for Nonlinear Genetic Association Regression

Example annotation file for three pathways.

Description

A dataset containing an annotation example for 4056 SNPs in three different pathways.

Usage

data(anno)

Format

A data frame with 4056 rows and 5 variables:

pathway

includes KEGG identifiers of three example pathways

gene

names of genes in the pathways

chr

specifies the chromosome

snp

includes rs-numbers of example SNPs

position

gives positions of example SNPs

Source

simulated data

Examples

data(anno)
head(anno)
# create gwas object
data(pheno)
data(geno)
gwas <- new('GWASdata', pheno=pheno, geno=geno, anno=anno, desc="some study") 

jmanitz/kangar00 documentation built on Jan. 7, 2023, 11:26 a.m.