pathway_info | R Documentation |
This function lists all genes formig a particular pathway
. Start and end
positions of these genes are extracted from the Ensemble database. The
database is accessed via the R-package biomaRt.
pathway_info(x) ## S4 method for signature 'character' pathway_info(x) ## S4 method for signature 'pathway_info' show(object) ## S4 method for signature 'pathway_info' summary(object)
x |
A |
object |
An object of class |
A data.frame
including as many rows as genes appear in the
pathway
. for each gene its name, the start and end point and the chromosome
it lies on are given.
show
Basic information on pathway_info
object.
summary
Summarized information on pathway_info
object.
info
A data.frame
including information on genes contained in
pathways with columns 'pathway', 'gene_start', 'gene_end', 'chr' and 'gene'.
Stefanie Friedrichs, Juliane Manitz
snp_info
, get_anno
data(hsa04022_info) # pathway_info('hsa04020') show(hsa04022_info) summary(hsa04022_info)
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