Man pages for jmarlab/attract
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
| AttractorModuleSet-class | Class AttractorModuleSet |
| attract-package | Methods to find the Gene Expression Modules that Represent... |
| buildCorMatrix | Internal function - builds the correlation matrix between an... |
| buildCustomIncidenceMatrix | This function builds an incidence matrix for custom gene... |
| buildKeggIncidenceMatrix | Internal function - buildings the KEGG incidence matrix... |
| calcFuncSynexprs | Functional enrichmental analysis for a set of synexpression... |
| calcInform | Function calculates the informativeness metric (average MSS)... |
| calcModfstat | Function calculates a modified F-statistic for a set of... |
| calcRss | Function calculates the average RSS for a set of cluster... |
| exprs.dat | Gene Expression Matrix of Published Data |
| filterDataSet | This function filters our lowly expressed genes in RNAseq... |
| findAttractors | Infers the set of cell-lineage specific gene expression... |
| findCorrPartners | Determines Genes with Highly Correlated Expression Profiles... |
| findOnepwaySynexprs | Internal function - finds the synexpression groups for a... |
| findSynexprs | This function finds the synexpression groups present within a... |
| flagPwayExists | Internal function - flags a gene if it exists in a pathway. |
| getCustomGenes | Function removes genes from the custom pathway that... |
| getPwayGenes | Function removes genes from the chosen pathway that... |
| loring.eset | An ExpressionSet Object containing published data from M?ller... |
| plotsynexprs | Visualizing the Average Expression Profile of a Synexpression... |
| removeFlatGenes | Flags a set of genes which demonstrates little variation... |
| samp.info | samp.info Contains the Sample Information for the Mueller... |
| subset.loring.eset | An ExpressionSet Object containing published data from M?ller... |
| SynExpressionSet-class | Class SynExpressionSet |
