filterDataSet: This function filters our lowly expressed genes in RNAseq...

In jmarlab/attract: Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Description

This function filters our lowly expressed genes in RNAseq data.

Usage

filterDataSet(data,filterPerc=0.75)

Arguments

data	A dataset with genes as rows and samples as columns.
filterPerc	a number specifying the percent of expression values that are not equal to 0 for a gene.

Details

This function removes any genes in a dataset that have an expression value of 0 for a specified percentage of samles.

Value

A data frame is returned.

Author(s)

Jessica Mar

Examples

data(exprs.dat)
exprs.filtered.dat <- filterDataSet(exprs.dat)

jmarlab/attract documentation built on May 23, 2019, 9:02 p.m.