SynExpressionSet-class: Class SynExpressionSet

In jmarlab/attract: Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Description

This is a class representation for storing synexpression group information.

Objects from the Class

Objects are output by the function findSynexprs. Objects can also be created by using new("SynExpressionSet", ...).

Slots

groups:

A list object denoting the probes or gene IDs (rnaseq) belonging to each synexpression group.

profiles:

A matrix of average expresson profiles for each synexpression group, each profile is stored as a row.

Methods

No methods have yet been defined with class "SynExpressionSet" in the signature.

Note

This class is described in more detail in the vignette.

Author(s)

Jessica Mar [e-mail]

Examples

new.synexpressionset <- new("SynExpressionSet", groups=list(), profiles=matrix(0))

jmarlab/attract documentation built on May 23, 2019, 9:02 p.m.