Files in jmbuhr/ShinyLipids
ShinyLipids
.Rbuildignore
.covrignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_server.R
R/app_ui.R
R/data_processing.R
R/defaults.R
R/dimensionality_reduction.R
R/global_imports.R
R/misc.R
R/plot_heatmap.R
R/plot_main.R
R/run_app.R
R/theme.R
R/update_inputs.R
R/user_functions.R
R/utils-pipe.R
README.Rmd
README.md
ShinyLipids.Rproj
app.R
codecov.yml
docs/.nojekyll
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Data-processing-in-ShinyLipids.html
docs/articles/Data-processing-in-ShinyLipids_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Data-processing-in-ShinyLipids_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Data-processing-in-ShinyLipids_files/header-attrs-2.3/header-attrs.js
docs/articles/Getting-startet-with-my-data-in-ShinyLipids.html
docs/articles/Getting-startet-with-my-data-in-ShinyLipids_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Getting-startet-with-my-data-in-ShinyLipids_files/header-attrs-2.3/header-attrs.js
docs/articles/Technical-aspects.html
docs/articles/Technical-aspects_files/DiagrammeR-styles-0.2/styles.css
docs/articles/Technical-aspects_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Technical-aspects_files/grViz-binding-1.0.6.1/grViz.js
docs/articles/Technical-aspects_files/header-attrs-2.3/header-attrs.js
docs/articles/Technical-aspects_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/Technical-aspects_files/viz-1.8.2/viz.js
docs/articles/WIP_blogpost.html
docs/articles/WIP_blogpost_files/DiagrammeR-binding-1.0.6.1/DiagrammeR.js
docs/articles/WIP_blogpost_files/DiagrammeR-styles-0.2/styles.css
docs/articles/WIP_blogpost_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/WIP_blogpost_files/chromatography-0.1/LICENSE
docs/articles/WIP_blogpost_files/chromatography-0.1/chromatography.js
docs/articles/WIP_blogpost_files/d3-3.3.8/LICENSE
docs/articles/WIP_blogpost_files/d3-3.3.8/d3.min.js
docs/articles/WIP_blogpost_files/dagre-0.4.0/LICENSE
docs/articles/WIP_blogpost_files/dagre-0.4.0/dagre-d3.min.js
docs/articles/WIP_blogpost_files/header-attrs-2.3/header-attrs.js
docs/articles/WIP_blogpost_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/WIP_blogpost_files/mermaid-0.3.0/LICENSE
docs/articles/WIP_blogpost_files/mermaid-0.3.0/dist/mermaid.css
docs/articles/WIP_blogpost_files/mermaid-0.3.0/dist/mermaid.slim.min.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/extra.css
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/addLipidProperties.html
docs/reference/collectLipidClassOrder.html
docs/reference/collectMetaData.html
docs/reference/collectRawData.html
docs/reference/createDatabase.html
docs/reference/createHeatmap.html
docs/reference/createMainPlot.html
docs/reference/createPcaPrep.html
docs/reference/createPlotData.html
docs/reference/createQueryForID.html
docs/reference/createWideData.html
docs/reference/defaultInput.html
docs/reference/doAllPairwiseComparisons.html
docs/reference/downloadHandlerFactoryCSV.html
docs/reference/downloadHandlerFactoryPDF.html
docs/reference/downloadHandlerFactoryRDS.html
docs/reference/figures/Screenshot from 2020-02-22 15-05-53.png
docs/reference/figures/logo.svg
docs/reference/figures/sl_main_view.png
docs/reference/filterIfNotNull.html
docs/reference/filterRawDataFor.html
docs/reference/generateDefaultInput.html
docs/reference/imputeMissingIf.html
docs/reference/index.html
docs/reference/mainScale.html
docs/reference/mainTheme.html
docs/reference/parseDate.html
docs/reference/pipe.html
docs/reference/readLipidMapsSDF.html
docs/reference/run_app.html
docs/reference/standardizeRawDataWithin.html
docs/reference/standardizeWithin.html
docs/reference/standardizeWithinTechnicalReplicatesIf.html
docs/reference/stat_chull.html
docs/reference/summarisePlotData.html
docs/reference/testAllMoreThanOneReplicate.html
docs/reference/testPairwise.html
docs/reference/updateAllRangeInputs.html
docs/reference/updateAllSelectizeInputs.html
docs/reference/updateInputsForSpeciesProfile.html
inst/extdata/exampleDatabase.db
man/addLipidProperties.Rd
man/collectLipidClassOrder.Rd
man/collectMetaData.Rd
man/collectRawData.Rd
man/createDatabase.Rd
man/createHeatmap.Rd
man/createMainPlot.Rd
man/createPcaPrep.Rd
man/createPlotData.Rd
man/createQueryForID.Rd
man/createWideData.Rd
man/defaultInput.Rd
man/doAllPairwiseComparisons.Rd
man/figures/logo.svg
man/filterIfNotNull.Rd
man/filterRawDataFor.Rd
man/imputeMissingIf.Rd
man/mainScale.Rd
man/mainTheme.Rd
man/parseDate.Rd
man/pipe.Rd
man/run_app.Rd
man/standardizeWithin.Rd
man/standardizeWithinTechnicalReplicatesIf.Rd
man/summarisePlotData.Rd
man/testAllMoreThanOneReplicate.Rd
man/testPairwise.Rd
man/updateAllRangeInputs.Rd
man/updateAllSelectizeInputs.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-backend-functions.R
tests/testthat/test-data-processing.R
tests/testthat/test-golem-recommended.R
tests/testthat/test-helper-functions.R
tests/testthat/test-plots.R
tests/testthat/test-user-functions.R
vignettes/.gitignore
vignettes/Data-processing-in-ShinyLipids.Rmd
vignettes/Getting-startet-with-my-data-in-ShinyLipids.Rmd
vignettes/Technical-aspects.Rmd
vignettes/WIP_blogpost.Rmd
vignettes/dataflow.dot
