get_count_data: Retrieve the counts from a data set.

In jminnier/shinysequin: Visualization of Sequencing Data with Shiny and ggvis.

Description

This function retrieves a data set containing the vectors of counts and selected gene identifiers.

Usage

get_count_data(groupvec, id_vars, data)

Arguments

groupvec	a character vector of group names (i.e. tissue type), assuming column names of counts include these characters
id_vars	a character vector of gene identifier column names
data	a data frame that includes counts and gene identifiers

Examples

mycounts <- get_count_data(groupvec=c("tissueA","tissueB","tissueC"),data=countdata, id_vars)
head(mycounts)

jminnier/shinysequin documentation built on May 19, 2019, 1:53 p.m.