structure: Population genetic structure

In jmsigner/fpga: fast population genetic analysis

Description

Functions to calculate population genetic differences between populations.

Usage

dest(x, stratum, size.correct = TRUE)

fst(x, stratum, size.correct = TRUE)

gst(x, stratum, size.correct = TRUE)

gst_p(x, stratum, size.correct = TRUE)

pw_gstructure(x, stratum, size.correct = TRUE, what = c("gst", "gst_p",
  "dest"))

Arguments

x	Three dimensional array with individuals, loci and alleles in the first, second and third dimension.
stratum	Vector of length nrow(x) indicating population membership.
size.correct	Logical value indicating whether or not to correct for sample size.

jmsigner/fpga documentation built on May 19, 2019, 1:56 p.m.