plot.nmr2dinsitu.data.object: Plot In situ NMR data

In jmstrat/NMR.Utils: Importing and processing Bruker NMR data

Description

This function plots in situ NMR data.

Usage

## S3 method for class 'nmr2dinsitu.data.object'
plot(nmr, use.default.layout = TRUE,
  separation = 0.1, separation.pos = c(4, 2), nmr.func = NULL,
  echem.func = NULL, ...)

Arguments

nmr	In situ nmr data
use.default.layout	If TRUE, a side-by-side 3:1 layout will be used for NMR-Echem. If FALSE, layout must be called prior to calling plot Plot #1 will be used for NMR, #2 for echem
separation	Gap between plots (in inches)
separation.pos	Where to put the separation – vector c(nmr, echem) where nmr,echem are one of 1=bottom, 2=left, 3=top, 4=right
nmr.func	Function to plot NMR data (default plot.nmr2d.data.object)
echem.func	Function to plot echem data (default plot_echem_vertical)
...	Further parameters will be passed to the plotting methods

Details

The echem function will always be passed the echem data restricted to the NMR scans plotted as its first argument, and a ylim parameter which will align its data as another argument. Any further named arguments provided via ... are passed through.

The NMR function will always be passed the NMR data as its first argument. Any further named arguments provided via ... are passed through. It is expected to return a numeric vector of the y values corresponding to an intensity of 0 for the first and last scans.

Value

Returns a function that will change the active plot to the NMR plot without disrupting the current layout (the echem plot is active by default when the plot function returns).

Examples

plot(data)

set_nmr <- plot(data)

# Add some annotations to the echem plot
time <- c(1, 2)
V <- Plotting.Utils::nearest(echem, Test_Time.s.=time * 3600)$Voltage.V
points(V, time, col=c("red", "blue"))

# Activate the nmr plot
set_nmr()
# Add annotations to the NMR plot
points(0, 10000, col="green")

jmstrat/NMR.Utils documentation built on July 14, 2019, 11:35 p.m.