API for jmw86069/jamenrich
Analysis and Visualization of Multiple Gene Set Enrichments
| Global functions | |
|---|---|
| add_pathway_direction | Man page |
| adjust_cnet_nodeset | Man page |
| adjust_cnet_set_relayout_gene | Man page |
| adjust_polygon_border | Man page |
| apply_cnet_direction | Man page |
| apply_nodeset_spacing | Man page |
| avg_angles | Man page |
| avg_colors_by_list | Man page |
| call_fn_ellipsis_deprecated | Man page |
| cell_fun_bivariate | Man page |
| cnet2df | Man page |
| cnet2im | Man page |
| cnetplotJam | Man page |
| cnetplot_internalJam | Man page |
| collapse_mem_clusters | Man page |
| colorRamp2D | Man page |
| color_edges_by_nodegroups | Man page |
| color_edges_by_nodes | Man page |
| color_edges_by_nodes_deprecated | Man page |
| color_nodes_by_nodegroups | Man page |
| colors_from_list | Man page |
| communities2nodegroups | Man page |
| curateIPAcolnames | Man page |
| deconcat_df2 | Man page |
| default_igraph_values | Man page |
| display_colorRamp2D | Man page |
| drawEllipse | Man page |
| edge_bundle_bipartite | Man page |
| edge_bundle_nodegroups | Man page |
| enrichDF2enrichResult | Man page |
| enrichList2IM | Man page |
| enrichList2df | Man page |
| enrichList2geneHitList | Man page |
| enrichMapJam | Man page |
| filter_mem_genes | Man page |
| filter_mem_sets | Man page |
| find_colname | Man page |
| fixSetLabels | Man page |
| flip_edges | Man page |
| get_bipartite_nodeset | Man page |
| get_cnet_nodeset | Man page |
| get_hull_data | Man page |
| get_igraph_arrow_mode | Man page |
| get_igraph_layout | Man page |
| grid_with_title | Man page |
| gsubs_remove | Man page |
| handle_igraph_param_list | Man page |
| heatmap_column_order_deprecated | Man page |
| heatmap_row_order_deprecated | Man page |
| igraph2pieGraph | Man page |
| im2list | Man page |
| im2list_dep | Man page |
| imSigned2list | Man page |
| imSigned2list_dep | Man page |
| importIPAenrichment | Man page |
| isColorBlank | Man page |
| jam_igraph | Man page |
| jam_igraph_arrows | Man page |
| jam_mypie | Man page |
| jam_plot_igraph | Man page |
| label_communities | Man page |
| layout_with_qfr | Man page |
| layout_with_qfrf | Man page |
| list2concordance | Man page |
| list2im | Man page |
| list2imSigned | Man page |
| make_cnet_test | Man page |
| make_legend_bivariate | Man page |
| make_point_hull | Man page |
| mem2cnet | Man page |
| mem2emap | Man page |
| memIM2cnet | Man page |
| mem_enrichment_heatmap | Man page |
| mem_find_overlap | Man page |
| mem_gene_path_heatmap | Man page |
| mem_legend | Man page |
| mem_multienrichplot | Man page |
| mem_plot_folio | Man page |
| multiEnrichMap | Man page |
| nodegroups2communities | Man page |
| nudge_igraph_node | Man page |
| order_colors | Man page |
| parse_igraph_plot_params | Man page |
| plot_layout_scale | Man page |
| rank_mem_clusters | Man page |
| rectifyPiegraph | Man page |
| relayout_with_qfr | Man page |
| removeIgraphBlanks | Man page |
| removeIgraphSinglets | Man page |
| reorderIgraphNodes | Man page |
| reorder_igraph_nodes | Man page |
| rotate_coordinates | Man page |
| rotate_igraph_layout | Man page |
| shape.coloredrectangle.clip | Man page |
| shape.coloredrectangle.plot | Man page |
| shape.ellipse.clip | Man page |
| shape.ellipse.plot | Man page |
| shape.jampie.clip | Man page |
| shape.jampie.plot | Man page |
| sort_colors_deprecated | Man page |
| spread_igraph_labels | Man page |
| subgraph_jam | Man page |
| subsetCnetIgraph | Man page |
| subset_igraph_components | Man page |
| subset_mem | Man page |
| summarize_node_spacing | Man page |
| sync_igraph_communities | Man page |
| topEnrichBySource | Man page |
| topEnrichListBySource | Man page |
| with_qfr | Man page |
| xyAngle | Man page |
