subgraph_jam: Subgraph using Jam extended logic

In jmw86069/jamenrich: Analysis and Visualization of Multiple Gene Set Enrichments

Subgraph using Jam extended logic

Description

Subgraph using Jam extended logic

Usage

subgraph_jam(graph, v)

Arguments

graph	igraph object
v	integer or logical vector indicating the nodes to retain in the final igraph object.

Details

This function extends the igraph::subgraph() function to include proper subset of the graph attribute "layout", which for some unknown reason does not subset the layout matrix consistent with the subset of igraph nodes.

See Also

Other jam utility functions: avg_angles(), avg_colors_by_list(), call_fn_ellipsis_deprecated(), cell_fun_bivariate(), collapse_mem_clusters(), colorRamp2D(), deconcat_df2(), display_colorRamp2D(), enrichList2geneHitList(), filter_mem_genes(), filter_mem_sets(), find_colname(), get_igraph_layout(), gsubs(), handle_igraph_param_list(), isColorBlank(), make_legend_bivariate(), make_point_hull(), mem_find_overlap(), order_colors(), rank_mem_clusters(), rotate_coordinates(), subset_mem(), summarize_node_spacing(), xyAngle()

Other jam igraph functions: cnet2df(), cnet2im(), cnetplotJam(), cnetplot_internalJam(), color_edges_by_nodegroups(), color_edges_by_nodes_deprecated(), color_edges_by_nodes(), color_nodes_by_nodegroups(), communities2nodegroups(), drawEllipse(), edge_bundle_bipartite(), edge_bundle_nodegroups(), enrichMapJam(), fixSetLabels(), flip_edges(), get_bipartite_nodeset(), igraph2pieGraph(), jam_igraph(), jam_plot_igraph(), label_communities(), layout_with_qfrf(), layout_with_qfr(), mem2emap(), memIM2cnet(), mem_multienrichplot(), nodegroups2communities(), rectifyPiegraph(), relayout_with_qfr(), removeIgraphBlanks(), removeIgraphSinglets(), reorderIgraphNodes(), rotate_igraph_layout(), spread_igraph_labels(), subsetCnetIgraph(), subset_igraph_components(), sync_igraph_communities(), with_qfr()

jmw86069/jamenrich documentation built on Feb. 3, 2024, 12:40 p.m.