Files in jmw86069/jamma
MA-plots for omics data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/jam-find-colname.R
R/jam-log2fold-to-fold.R
R/jam-misc.R
R/jam-update-fn-params.R
R/jam-volcano-plot.R
R/jamma-calc.R
R/jamma-center.R
R/jamma-ggjammaplot.R
R/jamma-norm.R
R/jamma-numeric-to-column-rank.R
R/jamma.r
README.Rmd
README.md
TODO.md
_pkgdown.yml
docs/404.html
docs/TODO.html
docs/articles/index.html
docs/articles/jamma-vignette.html
docs/articles/jamma-vignette_files/header-attrs-2.9/header-attrs.js
docs/articles/jammaVignette-Dilution-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/Rplot008.png
docs/reference/Rplot009.png
docs/reference/Rplot010.png
docs/reference/Rplot011.png
docs/reference/blockArrowMargin-1.png
docs/reference/blockArrowMargin.html
docs/reference/centerGeneData.html
docs/reference/centerGeneData_v1.html
docs/reference/element_grob.element_textbox_colorsub.html
docs/reference/element_textbox_colorsub.html
docs/reference/figures/README-Dilution-1.png
docs/reference/figures/README-Smooth-1.png
docs/reference/figures/README-SmoothViridis-1.png
docs/reference/figures/README-SmoothViridis-2.png
docs/reference/figures/README-Smoove-1.png
docs/reference/figures/README-pch1-1.png
docs/reference/figures/README-pchAlpha-1.png
docs/reference/figures/README-plotSmoove-1.png
docs/reference/find_colname.html
docs/reference/fold_to_log2fold.html
docs/reference/get_se_assaydata.html
docs/reference/ggjammaplot-1.png
docs/reference/ggjammaplot-2.png
docs/reference/ggjammaplot-3.png
docs/reference/ggjammaplot-4.png
docs/reference/ggjammaplot.html
docs/reference/gradient_rect-1.png
docs/reference/gradient_rect.html
docs/reference/handle_highlightPoints.html
docs/reference/index.html
docs/reference/jamma.html
docs/reference/jammacalc.html
docs/reference/jammanorm.html
docs/reference/jammaplot-1.png
docs/reference/jammaplot-10.png
docs/reference/jammaplot-11.png
docs/reference/jammaplot-2.png
docs/reference/jammaplot-3.png
docs/reference/jammaplot-4.png
docs/reference/jammaplot-5.png
docs/reference/jammaplot-6.png
docs/reference/jammaplot-7.png
docs/reference/jammaplot-8.png
docs/reference/jammaplot-9.png
docs/reference/jammaplot.html
docs/reference/log2fold_to_fold.html
docs/reference/logAxis.html
docs/reference/matrix_to_column_rank.html
docs/reference/outer_legend-1.png
docs/reference/outer_legend.html
docs/reference/points2polygonHull-1.png
docs/reference/points2polygonHull.html
docs/reference/update_function_params.html
docs/reference/update_list_elements.html
docs/reference/volcano_plot-1.png
docs/reference/volcano_plot-2.png
docs/reference/volcano_plot-3.png
docs/reference/volcano_plot-4.png
docs/reference/volcano_plot-5.png
docs/reference/volcano_plot.html
docs/sitemap.xml
jamma.Rproj
man/blockArrowMargin.Rd
man/centerGeneData.Rd
man/centerGeneData_v1.Rd
man/figures/README-Dilution-1.png
man/figures/README-Smooth-1.png
man/figures/README-SmoothViridis-1.png
man/figures/README-SmoothViridis-2.png
man/figures/README-Smoove-1.png
man/figures/README-pch1-1.png
man/figures/README-pchAlpha-1.png
man/figures/README-plotSmoove-1.png
man/find_colname.Rd
man/fold_to_log2fold.Rd
man/get_se_assaydata.Rd
man/gradient_rect.Rd
man/handle_highlightPoints.Rd
man/jamma.Rd
man/jammacalc.Rd
man/jammanorm.Rd
man/jammaplot.Rd
man/log2fold_to_fold.Rd
man/logAxis.Rd
man/matrix_to_column_rank.Rd
man/outer_legend.Rd
man/points2polygonHull.Rd
man/update_function_params.Rd
man/update_list_elements.Rd
man/volcano_plot.Rd
tests/testthat.R
tests/testthat/test-centerGeneData.R
vignettes/.gitignore
vignettes/jamma-vignette.Rmd
vignettes/jammaVignette-Dilution-1.png
