Files in jmw86069/jamma

MA-plots for omics data

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/jam-element_textbox_colorsub.R R/jam-find-colname.R R/jam-log2fold-to-fold.R R/jam-misc.R R/jam-update-fn-params.R R/jam-volcano-plot.R R/jamma-calc.R R/jamma-center.R R/jamma-ggjammaplot.R R/jamma-norm.R R/jamma-numeric-to-column-rank.R R/jamma.r README.Rmd README.md TODO.md

_pkgdown.yml

docs/404.html

docs/TODO.html

docs/articles/index.html

docs/articles/jamma-vignette.html

docs/articles/jamma-vignette_files/header-attrs-2.9/header-attrs.js

docs/articles/jammaVignette-Dilution-1.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/Rplot003.png

docs/reference/Rplot004.png

docs/reference/Rplot005.png

docs/reference/Rplot006.png

docs/reference/Rplot007.png

docs/reference/Rplot008.png

docs/reference/Rplot009.png

docs/reference/Rplot010.png

docs/reference/Rplot011.png

docs/reference/blockArrowMargin-1.png

docs/reference/blockArrowMargin.html

docs/reference/centerGeneData.html

docs/reference/centerGeneData_v1.html

docs/reference/element_grob.element_textbox_colorsub.html

docs/reference/element_textbox_colorsub.html

docs/reference/figures/README-Dilution-1.png

docs/reference/figures/README-Smooth-1.png

docs/reference/figures/README-SmoothViridis-1.png

docs/reference/figures/README-SmoothViridis-2.png

docs/reference/figures/README-Smoove-1.png

docs/reference/figures/README-pch1-1.png

docs/reference/figures/README-pchAlpha-1.png

docs/reference/figures/README-plotSmoove-1.png

docs/reference/find_colname.html

docs/reference/fold_to_log2fold.html

docs/reference/get_se_assaydata.html

docs/reference/ggjammaplot-1.png

docs/reference/ggjammaplot-2.png

docs/reference/ggjammaplot-3.png

docs/reference/ggjammaplot-4.png

docs/reference/ggjammaplot.html

docs/reference/gradient_rect-1.png

docs/reference/gradient_rect.html

docs/reference/handle_highlightPoints.html

docs/reference/index.html

docs/reference/jamma.html

docs/reference/jammacalc.html

docs/reference/jammanorm.html

docs/reference/jammaplot-1.png

docs/reference/jammaplot-10.png

docs/reference/jammaplot-11.png

docs/reference/jammaplot-2.png

docs/reference/jammaplot-3.png

docs/reference/jammaplot-4.png

docs/reference/jammaplot-5.png

docs/reference/jammaplot-6.png

docs/reference/jammaplot-7.png

docs/reference/jammaplot-8.png

docs/reference/jammaplot-9.png

docs/reference/jammaplot.html

docs/reference/log2fold_to_fold.html

docs/reference/logAxis.html

docs/reference/matrix_to_column_rank.html

docs/reference/outer_legend-1.png

docs/reference/outer_legend.html

docs/reference/points2polygonHull-1.png

docs/reference/points2polygonHull.html

docs/reference/update_function_params.html

docs/reference/update_list_elements.html

docs/reference/volcano_plot-1.png

docs/reference/volcano_plot-2.png

docs/reference/volcano_plot-3.png

docs/reference/volcano_plot-4.png

docs/reference/volcano_plot-5.png

docs/reference/volcano_plot.html

docs/sitemap.xml

jamma.Rproj

man/blockArrowMargin.Rd man/centerGeneData.Rd man/centerGeneData_v1.Rd man/element_grob.element_textbox_colorsub.Rd man/element_textbox_colorsub.Rd

man/figures/README-Dilution-1.png

man/figures/README-Smooth-1.png

man/figures/README-SmoothViridis-1.png

man/figures/README-SmoothViridis-2.png

man/figures/README-Smoove-1.png

man/figures/README-pch1-1.png

man/figures/README-pchAlpha-1.png

man/figures/README-plotSmoove-1.png

man/find_colname.Rd man/fold_to_log2fold.Rd man/get_se_assaydata.Rd man/gradient_rect.Rd man/handle_highlightPoints.Rd man/jamma.Rd man/jammacalc.Rd man/jammanorm.Rd man/jammaplot.Rd man/log2fold_to_fold.Rd man/logAxis.Rd man/matrix_to_column_rank.Rd man/outer_legend.Rd man/points2polygonHull.Rd man/update_function_params.Rd man/update_list_elements.Rd man/volcano_plot.Rd tests/testthat.R tests/testthat/test-centerGeneData.R

vignettes/.gitignore

vignettes/jamma-vignette.Rmd

vignettes/jammaVignette-Dilution-1.png

jmw86069/jamma documentation built on July 6, 2023, 1:09 p.m.