Man pages for jmw86069/jamma
MA-plots for omics data
| blockArrowMargin | Draw block arrows in plot margins |
| centerGeneData | Center gene data |
| centerGeneData_v1 | Center gene data |
| find_colname | Find colname by string or pattern |
| fold_to_log2fold | Convert normal signed fold change to log2 fold change |
| get_se_assaydata | Get SummarizedExperiment assay matrix data |
| gradient_rect | Rectangle with color gradient fill |
| handle_highlightPoints | Handle highlightPoints argument to jammaplot() |
| jamma | jamma: MA-plots for omics data |
| jammacalc | Calculate MA-plot data |
| jammanorm | Normalize data using MA-plot logic |
| jammaplot | Produce MA-plot of omics data. |
| log2fold_to_fold | Convert log2 fold change to signed fold change |
| logAxis | Log-scaled axis including transformed P-values |
| matrix_to_column_rank | Convert numeric matrix to column-rank data |
| outer_legend | Add legend in the outer margin |
| points2polygonHull | define a polygon hull around points |
| update_function_params | Update function default parameters |
| update_list_elements | Update a subset of list elements (deprecated) |
| volcano_plot | Volcano plot |
