geoChina: Download expression dataset by GSE id
In jmzeng1314/AnnoProbe: annotate the gene symbols for probes in expression array
Description
Usage
Arguments
Value
Examples
Description
geoChina will download the expression matrix and phenotype data as ExpressionSet format
from cloud in mainland China,
it's a alternative method for getGEO function from GEOquery package.
geoChina('gse1009') is the same as eSet=getGEO('gse1009', getGPL = F)
Usage
1
geoChina(gse = "GSE2546", mirror = "tercent")
Arguments
gse
input GSE id, such as GSE1009, GSE2546, default:GSE2546
Value
a list of ExpressionSet, which contains the expression matrix and phenotype data
Examples
1
2
3
jmzeng1314/AnnoProbe documentation built on June 2, 2020, 4:14 a.m.
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Description Usage Arguments Value Examples
Description
geoChina will download the expression matrix and phenotype data as ExpressionSet format
from cloud in mainland China,
it's a alternative method for getGEO function from GEOquery package.
geoChina('gse1009') is the same as eSet=getGEO('gse1009', getGPL = F)
Usage
1 | geoChina(gse = "GSE2546", mirror = "tercent")
|
Arguments
gse |
input GSE id, such as GSE1009, GSE2546, default:GSE2546 |
Value
a list of ExpressionSet, which contains the expression matrix and phenotype data
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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