Files in jngwehi/loxcodeR
Loxcode Tools
.Rbuildignore
.gitignore
Analysis.Rmd
Analysis.tex
DESCRIPTION
DraftApp.R
DraftApp.Rmd
DraftApp2.R
LoxcodeR_app/Loxcode_experiments/NN156.rds
LoxcodeR_app/Loxcode_experiments/NN156_small.rds
LoxcodeR_app/Loxcode_experiments/NN167.rds
LoxcodeR_app/Loxcode_experiments/NN167_small.rds
LoxcodeR_app/Loxcode_experiments/col.rds
LoxcodeR_app/report.Rmd
LoxcodeR_app/server.R
LoxcodeR_app/shiny_bookmarks/1a338e7a25612d0f/input.rds
LoxcodeR_app/shiny_bookmarks/536bd176670c002c/input.rds
LoxcodeR_app/shiny_bookmarks/929d3a0f79939ad3/input.rds
LoxcodeR_app/shiny_bookmarks/a2c69998e23daf13/input.rds
LoxcodeR_app/shiny_bookmarks/b155ff3c3d823df6/input.rds
LoxcodeR_app/shiny_bookmarks/e900d3f57525c424/0.xlsx
LoxcodeR_app/shiny_bookmarks/e900d3f57525c424/input.rds
LoxcodeR_app/shiny_bookmarks/e9fbb22d95c31220/input.rds
LoxcodeR_app/shiny_bookmarks/fb062f15d2d8408f/input.rds
LoxcodeR_app/shiny_bookmarks/fcfb249f0ee75928/input.rds
LoxcodeR_app/ui.R
LoxcodeR_app/www/myscript.js
Loxcode_experiments/Full.rds
Loxcode_experiments/NN156.rds
Loxcode_experiments/NN156_small
Loxcode_experiments/NN156_small.rds
Loxcode_experiments/NN167.rds
Loxcode_experiments/NN167_small
Loxcode_experiments/NN167_small.rds
Loxcode_experiments/Nn156_small.rds
Loxcode_experiments/Small.rds
Loxcode_experiments/fullRep.rds
Loxcode_experiments/smallRep.rds
NAMESPACE
NN156_small.rds
NN167_samples_small.xlsx
R/RcppExports.R
R/cassutil.R
R/dist.R
R/loxcode_experiment.R
R/loxcode_sample.R
R/loxcoder-package.R
R/plots.R
R/simulation.R
R/zzz.R
README.md
analysis/50k_merged.xlsx
analysis/MLLAF9_invivo/MLLAF9_merged.xlsx
analysis/MLLAF9_invivo/analysis.R
analysis/MLLAF9_invivo/sample_table_MLLAF9.xlsx
analysis/analysis.Rmd
analysis/out.pdf
analysis/sample_NN128.xlsx
analysis/venn.pdf
analysis/venn.pdf.2019-05-21_15-56-20.log
col.rds
loxcode_calculator.xlsx
loxcoder.Rproj
man/data.Rd
man/decode.Rd
man/decode_output-class.Rd
man/dist_count_beeswarm_plot.Rd
man/dist_orig_plot.Rd
man/get_cass_vec.Rd
man/get_data.Rd
man/get_origin_dist.Rd
man/get_pair_dist.Rd
man/get_rec_prob.Rd
man/get_valid.Rd
man/heatmap_plot.Rd
man/impute-loxcode_sample-method.Rd
man/impute_13.Rd
man/impute_13_impl.Rd
man/is_valid.Rd
man/load_from_xlsx.Rd
man/load_origin_distmaps.Rd
man/load_pair_distmaps.Rd
man/load_prob_files.Rd
man/load_samples.Rd
man/loxcode_experiment-class.Rd
man/loxcode_sample-class.Rd
man/makeid.Rd
man/merge_by.Rd
man/merge_sample.Rd
man/name-set.Rd
man/name.Rd
man/pack.Rd
man/pair_comparison_plot.Rd
man/rank_count_plot.Rd
man/readstats_plot.Rd
man/retrieve_dist_origin_single.Rd
man/retrieve_prob_ensemble.Rd
man/run_markov.Rd
man/sample.Rd
man/sample_comparison_pie.Rd
man/sampnames-set.Rd
man/sampnames.Rd
man/samptable-set.Rd
man/samptable.Rd
man/setup_count_matrix_codesets.Rd
man/size_plot.Rd
man/summary_table.Rd
man/valid.Rd
man/validate-loxcode_sample-method.Rd
man/venn_2way.Rd
man/venn_3way.Rd
nn156_samples.xlsx
nn167_samples.xlsx
other/reconstruct_loxcode/a.out
other/reconstruct_loxcode/edlib.h
other/reconstruct_loxcode/makefile
other/reconstruct_loxcode/reconstruct_loxcode.cpp
pedigree_test/gen
pedigree_test/gen.cpp
pedigree_test/getdist
pedigree_test/getdist.cpp
pedigree_test/heatmap.R
pedigree_test/input.txt
pedigree_test/make.sh
pedigree_test/makefile
pedigree_test/output.txt
pedigree_test/pop_simulation/gen
pedigree_test/pop_simulation/gen.cpp
pedigree_test/pop_simulation/getdist
pedigree_test/pop_simulation/getdist.cpp
pedigree_test/pop_simulation/makefile
pedigree_test/pop_simulation/run_job.sh
pedigree_test/tom_simulation/Makefile
pedigree_test/tom_simulation/cut_command
pedigree_test/tom_simulation/get_fl.py
pedigree_test/tom_simulation/getdist2
pedigree_test/tom_simulation/getdist2.cpp
pedigree_test/tom_simulation/remove_common.py
pedigree_test/tom_simulation/run.sh
pedigree_test/tree.R
report/report.tar.gz
rsconnect/documents/DraftApp.Rmd/shinyapps.io/jngwehi/draftapp.dcf
simulation.rmd
src/Makevars
src/RcppExports.cpp
src/cassutil.cpp
src/cassutil.h
src/decode.cpp
src/dist.cpp
src/dist.h
src/edlib.cpp
src/edlib.h
src/map_markov.cpp
src/pack.cpp
src/pack.h
src/tables.h
testing.R
testing2.R
tutorial.Rmd
