loxcode_experiment-class: Loxcode experiment object

In jngwehi/loxcodeR: Loxcode Tools

Description

The 'loxcode_experiment' object enables handling of data from multiple samples.

Slots

name

string, name of the experiment

suffix_R1

string, R1 suffix that is appended to the filename prefix, e.g. '_R1_001.fastq'

suffix_R2

string, R2 suffix that is appended to the filename prefix, e.g. '_R2_001.fastq'

dir

string, directory containing R1, R2 *.fastq files. Must end with '/'

samples

list, contains loxcode_sample objects that can be accessed by the sample name

samp_table

data.frame, user-specified table that can be loaded from an Excel spreadsheet

count_matrixes

, has barcode counts for all samples

code_sets

, has code sets generated by filtering, by default contains all codes in all samples

jngwehi/loxcodeR documentation built on March 17, 2020, 5:32 p.m.