Man pages for jnkoberstein/DEScan
Differential Enrichment Scan
| catRegions | concatenate region files from various chromosomes into a... |
| countFinalRegions | count reads falling within the final regions. |
| finalRegions | Align peaks to form common regions then filter regions for... |
| findPeaks | find peaks. |
| get_disjoint_max_win | find significant maximum z score windows. |
| loadPeaks | load peak files. |
| make_grid | make grid for enrichment scan. |
| merge_overlapping_intervals | merge overlapping peaks across replicates. |
| read_bam | read a bam file into a bed like format. |
| window_coverage | compute window coverage. |
