countFinalRegions: count reads falling within the final regions.
In jnkoberstein/DEScan: Differential Enrichment Scan
Description
Usage
Arguments
Value
Description
count reads falling within the final regions.
Usage
1
countFinalRegions(regions, bam_file_path, min_carriers = 2)
Arguments
regions
regions of interest to count reads across.
bam_file_path
path to bam files to be used for read counting.
min_carriers
integer indicating minumum number of replicates a region must appear in to be utilized for count matrix construction.
Value
Matrix containing read counts with regions as rows and samples as columns.
jnkoberstein/DEScan documentation built on May 29, 2019, 11:39 a.m.
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Description Usage Arguments Value
Description
count reads falling within the final regions.
Usage
1 | countFinalRegions(regions, bam_file_path, min_carriers = 2)
|
Arguments
regions |
regions of interest to count reads across. |
bam_file_path |
path to bam files to be used for read counting. |
min_carriers |
integer indicating minumum number of replicates a region must appear in to be utilized for count matrix construction. |
Value
Matrix containing read counts with regions as rows and samples as columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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